Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02865 and RR42_RS02870 are separated by 307 nucleotides RR42_RS02870 and RR42_RS02875 are separated by 33 nucleotides
RR42_RS02865: RR42_RS02865 - chloride channel protein, at 638,142 to 639,830
_RS02865
RR42_RS02870: RR42_RS02870 - RNA helicase, at 640,138 to 641,826
_RS02870
RR42_RS02875: RR42_RS02875 - serine/threonine protein kinase, at 641,860 to 642,921
_RS02875
Position (kb) 640
641
642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 639.195 kb on + strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.557 kb on + strand, within RR42_RS02865 at 639.557 kb on + strand, within RR42_RS02865 at 639.558 kb on - strand, within RR42_RS02865 at 639.558 kb on - strand, within RR42_RS02865 at 639.559 kb on + strand, within RR42_RS02865 at 639.559 kb on + strand, within RR42_RS02865 at 639.560 kb on - strand, within RR42_RS02865 at 639.678 kb on + strand at 639.689 kb on + strand at 639.789 kb on - strand at 639.996 kb on - strand at 640.000 kb on + strand at 640.001 kb on - strand at 640.173 kb on + strand at 640.173 kb on + strand at 640.174 kb on - strand at 640.174 kb on - strand at 640.200 kb on + strand at 640.200 kb on + strand at 640.200 kb on + strand at 640.200 kb on + strand at 640.201 kb on - strand at 640.201 kb on - strand at 640.201 kb on - strand at 640.201 kb on - strand at 640.201 kb on - strand at 640.437 kb on + strand, within RR42_RS02870 at 640.441 kb on + strand, within RR42_RS02870 at 640.441 kb on + strand, within RR42_RS02870 at 640.442 kb on - strand, within RR42_RS02870 at 640.792 kb on - strand, within RR42_RS02870 at 640.823 kb on - strand, within RR42_RS02870 at 641.107 kb on + strand, within RR42_RS02870 at 641.107 kb on + strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.134 kb on + strand, within RR42_RS02870 at 641.134 kb on + strand, within RR42_RS02870 at 641.135 kb on - strand, within RR42_RS02870 at 641.135 kb on - strand, within RR42_RS02870 at 641.824 kb on + strand at 641.858 kb on + strand at 641.858 kb on + strand at 641.858 kb on + strand at 641.859 kb on - strand at 641.932 kb on + strand at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.020 kb on - strand, within RR42_RS02875 at 642.020 kb on - strand, within RR42_RS02875 at 642.079 kb on + strand, within RR42_RS02875 at 642.271 kb on - strand, within RR42_RS02875 at 642.331 kb on + strand, within RR42_RS02875 at 642.405 kb on + strand, within RR42_RS02875 at 642.405 kb on + strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.604 kb on - strand, within RR42_RS02875 at 642.697 kb on + strand, within RR42_RS02875 at 642.698 kb on - strand, within RR42_RS02875
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 639,195 + RR42_RS02865 0.62 -1.8 639,196 - RR42_RS02865 0.62 +0.7 639,196 - RR42_RS02865 0.62 -2.9 639,196 - RR42_RS02865 0.62 +2.6 639,196 - RR42_RS02865 0.62 +1.4 639,196 - RR42_RS02865 0.62 +0.6 639,557 + RR42_RS02865 0.84 -1.6 639,557 + RR42_RS02865 0.84 -1.1 639,558 - RR42_RS02865 0.84 +2.4 639,558 - RR42_RS02865 0.84 +0.5 639,559 + RR42_RS02865 0.84 -2.8 639,559 + RR42_RS02865 0.84 -2.7 639,560 - RR42_RS02865 0.84 -3.3 639,678 + -0.6 639,689 + +0.2 639,789 - +1.7 639,996 - -0.3 640,000 + +0.9 640,001 - +1.1 640,173 + +1.6 640,173 + -2.4 640,174 - -0.9 640,174 - +0.2 640,200 + +1.7 640,200 + -2.1 640,200 + -2.4 640,200 + +0.5 640,201 - -2.0 640,201 - -0.5 640,201 - -0.9 640,201 - -1.5 640,201 - -1.1 640,437 + RR42_RS02870 0.18 -1.1 640,441 + RR42_RS02870 0.18 -0.7 640,441 + RR42_RS02870 0.18 +1.5 640,442 - RR42_RS02870 0.18 +1.8 640,792 - RR42_RS02870 0.39 +0.2 640,823 - RR42_RS02870 0.41 -1.7 641,107 + RR42_RS02870 0.57 +1.3 641,107 + RR42_RS02870 0.57 -2.4 641,108 - RR42_RS02870 0.57 -2.2 641,108 - RR42_RS02870 0.57 -0.2 641,108 - RR42_RS02870 0.57 -0.5 641,134 + RR42_RS02870 0.59 +1.1 641,134 + RR42_RS02870 0.59 -1.0 641,135 - RR42_RS02870 0.59 +0.9 641,135 - RR42_RS02870 0.59 -2.0 641,824 + -1.3 641,858 + +2.2 641,858 + -2.6 641,858 + -0.7 641,859 - +0.2 641,932 + +0.2 642,015 + RR42_RS02875 0.15 +2.9 642,015 + RR42_RS02875 0.15 +1.0 642,015 + RR42_RS02875 0.15 -1.6 642,015 + RR42_RS02875 0.15 -1.1 642,015 + RR42_RS02875 0.15 -1.2 642,015 + RR42_RS02875 0.15 +1.6 642,015 + RR42_RS02875 0.15 +2.9 642,016 - RR42_RS02875 0.15 -0.6 642,016 - RR42_RS02875 0.15 -0.1 642,016 - RR42_RS02875 0.15 +0.4 642,019 + RR42_RS02875 0.15 +1.2 642,019 + RR42_RS02875 0.15 -2.8 642,019 + RR42_RS02875 0.15 -0.5 642,019 + RR42_RS02875 0.15 +1.7 642,019 + RR42_RS02875 0.15 -0.2 642,019 + RR42_RS02875 0.15 +2.3 642,020 - RR42_RS02875 0.15 -1.2 642,020 - RR42_RS02875 0.15 +1.7 642,079 + RR42_RS02875 0.21 +0.5 642,271 - RR42_RS02875 0.39 -0.9 642,331 + RR42_RS02875 0.44 +1.1 642,405 + RR42_RS02875 0.51 +0.7 642,405 + RR42_RS02875 0.51 +0.7 642,406 - RR42_RS02875 0.51 -1.4 642,406 - RR42_RS02875 0.51 -0.1 642,406 - RR42_RS02875 0.51 +0.1 642,406 - RR42_RS02875 0.51 +1.0 642,406 - RR42_RS02875 0.51 -0.9 642,604 - RR42_RS02875 0.70 +2.2 642,697 + RR42_RS02875 0.79 +0.8 642,698 - RR42_RS02875 0.79 +1.0
Or see this region's nucleotide sequence