Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02585

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02575 and RR42_RS02580 are separated by 63 nucleotidesRR42_RS02580 and RR42_RS02585 are separated by 11 nucleotidesRR42_RS02585 and RR42_RS02590 overlap by 4 nucleotidesRR42_RS02590 and RR42_RS02595 are separated by 145 nucleotides RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053 _RS02575 RR42_RS02580: RR42_RS02580 - amino acid ABC transporter permease, at 580,117 to 580,845 _RS02580 RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540 _RS02585 RR42_RS02590: RR42_RS02590 - amino acid ABC transporter ATP-binding protein, at 581,537 to 582,271 _RS02590 RR42_RS02595: RR42_RS02595 - glutamine amidotransferase, at 582,417 to 583,247 _RS02595 Position (kb) 580 581 582Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 579.940 kb on + strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 580.054 kb on + strandat 580.055 kb on - strandat 580.123 kb on + strandat 580.123 kb on + strandat 580.123 kb on + strandat 580.124 kb on - strandat 580.124 kb on - strandat 580.124 kb on - strandat 580.142 kb on + strandat 580.143 kb on - strandat 580.143 kb on - strandat 580.143 kb on - strandat 580.174 kb on + strandat 580.174 kb on + strandat 580.175 kb on - strandat 580.316 kb on - strand, within RR42_RS02580at 580.316 kb on - strand, within RR42_RS02580at 580.316 kb on - strand, within RR42_RS02580at 580.332 kb on + strand, within RR42_RS02580at 580.333 kb on - strand, within RR42_RS02580at 580.335 kb on + strand, within RR42_RS02580at 580.570 kb on + strand, within RR42_RS02580at 580.571 kb on - strand, within RR42_RS02580at 580.576 kb on + strand, within RR42_RS02580at 580.577 kb on - strand, within RR42_RS02580at 580.577 kb on - strand, within RR42_RS02580at 580.583 kb on + strand, within RR42_RS02580at 580.583 kb on + strand, within RR42_RS02580at 580.714 kb on + strand, within RR42_RS02580at 580.714 kb on + strand, within RR42_RS02580at 580.715 kb on - strand, within RR42_RS02580at 580.729 kb on + strand, within RR42_RS02580at 580.759 kb on + strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.843 kb on + strandat 580.843 kb on + strandat 580.843 kb on + strandat 580.844 kb on - strandat 580.844 kb on - strandat 580.844 kb on - strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 581.037 kb on + strand, within RR42_RS02585at 581.037 kb on + strand, within RR42_RS02585at 581.037 kb on + strand, within RR42_RS02585at 581.038 kb on - strand, within RR42_RS02585at 581.038 kb on - strand, within RR42_RS02585at 581.193 kb on + strand, within RR42_RS02585at 581.194 kb on - strand, within RR42_RS02585at 581.194 kb on - strand, within RR42_RS02585at 581.196 kb on + strand, within RR42_RS02585at 581.197 kb on - strand, within RR42_RS02585at 581.197 kb on - strand, within RR42_RS02585at 581.274 kb on + strand, within RR42_RS02585at 581.367 kb on - strand, within RR42_RS02585at 581.379 kb on + strand, within RR42_RS02585at 581.379 kb on + strand, within RR42_RS02585at 581.379 kb on + strand, within RR42_RS02585at 581.380 kb on - strand, within RR42_RS02585at 581.380 kb on - strand, within RR42_RS02585at 581.380 kb on - strand, within RR42_RS02585at 581.380 kb on - strand, within RR42_RS02585at 581.416 kb on - strand, within RR42_RS02585at 581.475 kb on + strandat 581.476 kb on - strandat 581.476 kb on - strandat 581.483 kb on + strandat 581.536 kb on + strandat 581.536 kb on + strandat 581.536 kb on + strandat 581.568 kb on - strandat 581.568 kb on - strandat 581.894 kb on + strand, within RR42_RS02590at 581.895 kb on - strand, within RR42_RS02590at 582.361 kb on + strandat 582.361 kb on + strandat 582.361 kb on + strandat 582.361 kb on + strandat 582.361 kb on + strandat 582.361 kb on + strandat 582.362 kb on - strandat 582.362 kb on - strandat 582.362 kb on - strandat 582.362 kb on - strandat 582.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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579,940 + RR42_RS02575 0.87 -0.5
579,940 + RR42_RS02575 0.87 +1.3
579,940 + RR42_RS02575 0.87 -2.0
580,054 + -2.7
580,055 - +0.2
580,123 + -4.0
580,123 + -0.1
580,123 + -2.2
580,124 - +0.5
580,124 - -3.8
580,124 - -0.7
580,142 + -1.6
580,143 - -2.5
580,143 - -0.0
580,143 - -4.0
580,174 + -1.0
580,174 + -1.1
580,175 - -2.8
580,316 - RR42_RS02580 0.27 -1.3
580,316 - RR42_RS02580 0.27 -4.6
580,316 - RR42_RS02580 0.27 -2.6
580,332 + RR42_RS02580 0.29 -0.3
580,333 - RR42_RS02580 0.30 -0.4
580,335 + RR42_RS02580 0.30 -1.0
580,570 + RR42_RS02580 0.62 +0.3
580,571 - RR42_RS02580 0.62 -1.6
580,576 + RR42_RS02580 0.63 -2.0
580,577 - RR42_RS02580 0.63 -1.1
580,577 - RR42_RS02580 0.63 -2.9
580,583 + RR42_RS02580 0.64 +0.5
580,583 + RR42_RS02580 0.64 -4.0
580,714 + RR42_RS02580 0.82 -4.3
580,714 + RR42_RS02580 0.82 -4.8
580,715 - RR42_RS02580 0.82 -3.9
580,729 + RR42_RS02580 0.84 -1.8
580,759 + RR42_RS02580 0.88 -0.9
580,760 - RR42_RS02580 0.88 -0.1
580,760 - RR42_RS02580 0.88 -2.5
580,760 - RR42_RS02580 0.88 +0.5
580,843 + +2.1
580,843 + -3.8
580,843 + +1.2
580,844 - -3.1
580,844 - -0.6
580,844 - -2.1
580,863 + -3.3
580,863 + -0.2
580,863 + +3.8
580,863 + -2.2
580,864 - +0.4
580,864 - -3.1
580,864 - -0.1
580,864 - +2.0
580,864 - -2.2
580,865 + -2.5
580,865 + +1.7
580,865 + -2.9
580,865 + +0.7
580,865 + -1.5
580,865 + -2.6
580,866 - -1.6
580,866 - -0.9
580,866 - -3.3
580,866 - -0.4
580,866 - -1.1
580,866 - -0.3
580,866 - +0.6
580,866 - -0.3
581,037 + RR42_RS02585 0.26 -4.2
581,037 + RR42_RS02585 0.26 -1.1
581,037 + RR42_RS02585 0.26 -1.4
581,038 - RR42_RS02585 0.26 -1.2
581,038 - RR42_RS02585 0.26 +0.1
581,193 + RR42_RS02585 0.49 -0.3
581,194 - RR42_RS02585 0.49 -3.9
581,194 - RR42_RS02585 0.49 -2.2
581,196 + RR42_RS02585 0.50 -0.7
581,197 - RR42_RS02585 0.50 +2.2
581,197 - RR42_RS02585 0.50 -0.7
581,274 + RR42_RS02585 0.61 -1.6
581,367 - RR42_RS02585 0.75 -4.3
581,379 + RR42_RS02585 0.76 +1.7
581,379 + RR42_RS02585 0.76 -0.1
581,379 + RR42_RS02585 0.76 -4.0
581,380 - RR42_RS02585 0.76 -3.9
581,380 - RR42_RS02585 0.76 -1.2
581,380 - RR42_RS02585 0.76 -1.6
581,380 - RR42_RS02585 0.76 -0.2
581,416 - RR42_RS02585 0.82 -1.4
581,475 + -2.6
581,476 - +1.7
581,476 - -0.1
581,483 + -2.7
581,536 + -3.2
581,536 + +0.5
581,536 + -0.3
581,568 - -2.9
581,568 - -3.3
581,894 + RR42_RS02590 0.49 -1.1
581,895 - RR42_RS02590 0.49 +0.5
582,361 + +0.2
582,361 + +0.2
582,361 + +1.0
582,361 + +0.9
582,361 + -1.4
582,361 + +2.9
582,362 - -2.6
582,362 - +0.1
582,362 - +1.6
582,362 - +0.7
582,362 - -0.8

Or see this region's nucleotide sequence