Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02575 and RR42_RS02580 are separated by 63 nucleotides RR42_RS02580 and RR42_RS02585 are separated by 11 nucleotides RR42_RS02585 and RR42_RS02590 overlap by 4 nucleotides
RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053
_RS02575
RR42_RS02580: RR42_RS02580 - amino acid ABC transporter permease, at 580,117 to 580,845
_RS02580
RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540
_RS02585
RR42_RS02590: RR42_RS02590 - amino acid ABC transporter ATP-binding protein, at 581,537 to 582,271
_RS02590
Position (kb) 580
581 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 579.153 kb on + strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.343 kb on + strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575 at 579.844 kb on + strand, within RR42_RS02575 at 579.845 kb on - strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 579.940 kb on + strand, within RR42_RS02575 at 580.054 kb on + strand at 580.055 kb on - strand at 580.123 kb on + strand at 580.123 kb on + strand at 580.123 kb on + strand at 580.124 kb on - strand at 580.124 kb on - strand at 580.124 kb on - strand at 580.142 kb on + strand at 580.143 kb on - strand at 580.143 kb on - strand at 580.143 kb on - strand at 580.174 kb on + strand at 580.174 kb on + strand at 580.175 kb on - strand at 580.316 kb on - strand, within RR42_RS02580 at 580.316 kb on - strand, within RR42_RS02580 at 580.316 kb on - strand, within RR42_RS02580 at 580.332 kb on + strand, within RR42_RS02580 at 580.333 kb on - strand, within RR42_RS02580 at 580.335 kb on + strand, within RR42_RS02580 at 580.570 kb on + strand, within RR42_RS02580 at 580.571 kb on - strand, within RR42_RS02580 at 580.576 kb on + strand, within RR42_RS02580 at 580.577 kb on - strand, within RR42_RS02580 at 580.577 kb on - strand, within RR42_RS02580 at 580.583 kb on + strand, within RR42_RS02580 at 580.583 kb on + strand, within RR42_RS02580 at 580.714 kb on + strand, within RR42_RS02580 at 580.714 kb on + strand, within RR42_RS02580 at 580.715 kb on - strand, within RR42_RS02580 at 580.729 kb on + strand, within RR42_RS02580 at 580.759 kb on + strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.760 kb on - strand, within RR42_RS02580 at 580.843 kb on + strand at 580.843 kb on + strand at 580.843 kb on + strand at 580.844 kb on - strand at 580.844 kb on - strand at 580.844 kb on - strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.863 kb on + strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.864 kb on - strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.865 kb on + strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 580.866 kb on - strand at 581.037 kb on + strand, within RR42_RS02585 at 581.037 kb on + strand, within RR42_RS02585 at 581.037 kb on + strand, within RR42_RS02585 at 581.038 kb on - strand, within RR42_RS02585 at 581.038 kb on - strand, within RR42_RS02585 at 581.193 kb on + strand, within RR42_RS02585 at 581.194 kb on - strand, within RR42_RS02585 at 581.194 kb on - strand, within RR42_RS02585 at 581.196 kb on + strand, within RR42_RS02585 at 581.197 kb on - strand, within RR42_RS02585 at 581.197 kb on - strand, within RR42_RS02585 at 581.274 kb on + strand, within RR42_RS02585 at 581.367 kb on - strand, within RR42_RS02585 at 581.379 kb on + strand, within RR42_RS02585 at 581.379 kb on + strand, within RR42_RS02585 at 581.379 kb on + strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.380 kb on - strand, within RR42_RS02585 at 581.416 kb on - strand, within RR42_RS02585 at 581.475 kb on + strand at 581.476 kb on - strand at 581.476 kb on - strand at 581.483 kb on + strand at 581.536 kb on + strand at 581.536 kb on + strand at 581.536 kb on + strand at 581.568 kb on - strand at 581.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 579,153 + -2.9 579,154 - +1.3 579,154 - +0.7 579,154 - -4.4 579,271 - RR42_RS02575 0.13 +1.1 579,271 - RR42_RS02575 0.13 -1.9 579,271 - RR42_RS02575 0.13 -0.4 579,307 + RR42_RS02575 0.17 -3.0 579,307 + RR42_RS02575 0.17 -0.5 579,308 - RR42_RS02575 0.17 +1.1 579,308 - RR42_RS02575 0.17 -2.0 579,343 + RR42_RS02575 0.21 -2.3 579,344 - RR42_RS02575 0.21 +1.0 579,344 - RR42_RS02575 0.21 -0.0 579,844 + RR42_RS02575 0.77 +2.3 579,845 - RR42_RS02575 0.77 +0.5 579,940 + RR42_RS02575 0.87 -0.5 579,940 + RR42_RS02575 0.87 +1.3 579,940 + RR42_RS02575 0.87 -2.0 580,054 + -2.7 580,055 - +0.2 580,123 + -4.0 580,123 + -0.1 580,123 + -2.2 580,124 - +0.5 580,124 - -3.8 580,124 - -0.7 580,142 + -1.6 580,143 - -2.5 580,143 - -0.0 580,143 - -4.0 580,174 + -1.0 580,174 + -1.1 580,175 - -2.8 580,316 - RR42_RS02580 0.27 -1.3 580,316 - RR42_RS02580 0.27 -4.6 580,316 - RR42_RS02580 0.27 -2.6 580,332 + RR42_RS02580 0.29 -0.3 580,333 - RR42_RS02580 0.30 -0.4 580,335 + RR42_RS02580 0.30 -1.0 580,570 + RR42_RS02580 0.62 +0.3 580,571 - RR42_RS02580 0.62 -1.6 580,576 + RR42_RS02580 0.63 -2.0 580,577 - RR42_RS02580 0.63 -1.1 580,577 - RR42_RS02580 0.63 -2.9 580,583 + RR42_RS02580 0.64 +0.5 580,583 + RR42_RS02580 0.64 -4.0 580,714 + RR42_RS02580 0.82 -4.3 580,714 + RR42_RS02580 0.82 -4.8 580,715 - RR42_RS02580 0.82 -3.9 580,729 + RR42_RS02580 0.84 -1.8 580,759 + RR42_RS02580 0.88 -0.9 580,760 - RR42_RS02580 0.88 -0.1 580,760 - RR42_RS02580 0.88 -2.5 580,760 - RR42_RS02580 0.88 +0.5 580,843 + +2.1 580,843 + -3.8 580,843 + +1.2 580,844 - -3.1 580,844 - -0.6 580,844 - -2.1 580,863 + -3.3 580,863 + -0.2 580,863 + +3.8 580,863 + -2.2 580,864 - +0.4 580,864 - -3.1 580,864 - -0.1 580,864 - +2.0 580,864 - -2.2 580,865 + -2.5 580,865 + +1.7 580,865 + -2.9 580,865 + +0.7 580,865 + -1.5 580,865 + -2.6 580,866 - -1.6 580,866 - -0.9 580,866 - -3.3 580,866 - -0.4 580,866 - -1.1 580,866 - -0.3 580,866 - +0.6 580,866 - -0.3 581,037 + RR42_RS02585 0.26 -4.2 581,037 + RR42_RS02585 0.26 -1.1 581,037 + RR42_RS02585 0.26 -1.4 581,038 - RR42_RS02585 0.26 -1.2 581,038 - RR42_RS02585 0.26 +0.1 581,193 + RR42_RS02585 0.49 -0.3 581,194 - RR42_RS02585 0.49 -3.9 581,194 - RR42_RS02585 0.49 -2.2 581,196 + RR42_RS02585 0.50 -0.7 581,197 - RR42_RS02585 0.50 +2.2 581,197 - RR42_RS02585 0.50 -0.7 581,274 + RR42_RS02585 0.61 -1.6 581,367 - RR42_RS02585 0.75 -4.3 581,379 + RR42_RS02585 0.76 +1.7 581,379 + RR42_RS02585 0.76 -0.1 581,379 + RR42_RS02585 0.76 -4.0 581,380 - RR42_RS02585 0.76 -3.9 581,380 - RR42_RS02585 0.76 -1.2 581,380 - RR42_RS02585 0.76 -1.6 581,380 - RR42_RS02585 0.76 -0.2 581,416 - RR42_RS02585 0.82 -1.4 581,475 + -2.6 581,476 - +1.7 581,476 - -0.1 581,483 + -2.7 581,536 + -3.2 581,536 + +0.5 581,536 + -0.3 581,568 - -2.9 581,568 - -3.3
Or see this region's nucleotide sequence