Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02575

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02570 and RR42_RS02575 are separated by 364 nucleotidesRR42_RS02575 and RR42_RS02580 are separated by 63 nucleotidesRR42_RS02580 and RR42_RS02585 are separated by 11 nucleotides RR42_RS02570: RR42_RS02570 - glutamate dehydrogenase, at 577,482 to 578,789 _RS02570 RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053 _RS02575 RR42_RS02580: RR42_RS02580 - amino acid ABC transporter permease, at 580,117 to 580,845 _RS02580 RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540 _RS02585 Position (kb) 579 580 581Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 578.283 kb on + strand, within RR42_RS02570at 578.283 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.535 kb on - strand, within RR42_RS02570at 578.586 kb on + strand, within RR42_RS02570at 578.599 kb on + strand, within RR42_RS02570at 578.600 kb on - strand, within RR42_RS02570at 578.712 kb on - strandat 578.850 kb on + strandat 578.901 kb on + strandat 578.901 kb on + strandat 578.902 kb on - strandat 579.091 kb on - strandat 579.091 kb on - strandat 579.091 kb on - strandat 579.153 kb on + strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.343 kb on + strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575at 579.844 kb on + strand, within RR42_RS02575at 579.845 kb on - strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 580.054 kb on + strandat 580.055 kb on - strandat 580.123 kb on + strandat 580.123 kb on + strandat 580.123 kb on + strandat 580.124 kb on - strandat 580.124 kb on - strandat 580.124 kb on - strandat 580.142 kb on + strandat 580.143 kb on - strandat 580.143 kb on - strandat 580.143 kb on - strandat 580.174 kb on + strandat 580.174 kb on + strandat 580.175 kb on - strandat 580.316 kb on - strand, within RR42_RS02580at 580.316 kb on - strand, within RR42_RS02580at 580.316 kb on - strand, within RR42_RS02580at 580.332 kb on + strand, within RR42_RS02580at 580.333 kb on - strand, within RR42_RS02580at 580.335 kb on + strand, within RR42_RS02580at 580.570 kb on + strand, within RR42_RS02580at 580.571 kb on - strand, within RR42_RS02580at 580.576 kb on + strand, within RR42_RS02580at 580.577 kb on - strand, within RR42_RS02580at 580.577 kb on - strand, within RR42_RS02580at 580.583 kb on + strand, within RR42_RS02580at 580.583 kb on + strand, within RR42_RS02580at 580.714 kb on + strand, within RR42_RS02580at 580.714 kb on + strand, within RR42_RS02580at 580.715 kb on - strand, within RR42_RS02580at 580.729 kb on + strand, within RR42_RS02580at 580.759 kb on + strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.843 kb on + strandat 580.843 kb on + strandat 580.843 kb on + strandat 580.844 kb on - strandat 580.844 kb on - strandat 580.844 kb on - strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 581.037 kb on + strand, within RR42_RS02585at 581.037 kb on + strand, within RR42_RS02585at 581.037 kb on + strand, within RR42_RS02585at 581.038 kb on - strand, within RR42_RS02585at 581.038 kb on - strand, within RR42_RS02585

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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578,283 + RR42_RS02570 0.61 +1.2
578,283 + RR42_RS02570 0.61 -0.0
578,322 + RR42_RS02570 0.64 +1.7
578,322 + RR42_RS02570 0.64 -0.5
578,322 + RR42_RS02570 0.64 +0.5
578,323 - RR42_RS02570 0.64 +0.5
578,323 - RR42_RS02570 0.64 +0.5
578,323 - RR42_RS02570 0.64 +1.2
578,535 - RR42_RS02570 0.81 -1.3
578,586 + RR42_RS02570 0.84 -0.2
578,599 + RR42_RS02570 0.85 -0.7
578,600 - RR42_RS02570 0.85 -0.2
578,712 - +1.5
578,850 + -1.6
578,901 + -0.3
578,901 + -0.6
578,902 - -3.0
579,091 - +2.1
579,091 - +0.9
579,091 - -0.9
579,153 + -2.9
579,154 - +1.3
579,154 - +0.7
579,154 - -4.4
579,271 - RR42_RS02575 0.13 +1.1
579,271 - RR42_RS02575 0.13 -1.9
579,271 - RR42_RS02575 0.13 -0.4
579,307 + RR42_RS02575 0.17 -3.0
579,307 + RR42_RS02575 0.17 -0.5
579,308 - RR42_RS02575 0.17 +1.1
579,308 - RR42_RS02575 0.17 -2.0
579,343 + RR42_RS02575 0.21 -2.3
579,344 - RR42_RS02575 0.21 +1.0
579,344 - RR42_RS02575 0.21 -0.0
579,844 + RR42_RS02575 0.77 +2.3
579,845 - RR42_RS02575 0.77 +0.5
579,940 + RR42_RS02575 0.87 -0.5
579,940 + RR42_RS02575 0.87 +1.3
579,940 + RR42_RS02575 0.87 -2.0
580,054 + -2.7
580,055 - +0.2
580,123 + -4.0
580,123 + -0.1
580,123 + -2.2
580,124 - +0.5
580,124 - -3.8
580,124 - -0.7
580,142 + -1.6
580,143 - -2.5
580,143 - -0.0
580,143 - -4.0
580,174 + -1.0
580,174 + -1.1
580,175 - -2.8
580,316 - RR42_RS02580 0.27 -1.3
580,316 - RR42_RS02580 0.27 -4.6
580,316 - RR42_RS02580 0.27 -2.6
580,332 + RR42_RS02580 0.29 -0.3
580,333 - RR42_RS02580 0.30 -0.4
580,335 + RR42_RS02580 0.30 -1.0
580,570 + RR42_RS02580 0.62 +0.3
580,571 - RR42_RS02580 0.62 -1.6
580,576 + RR42_RS02580 0.63 -2.0
580,577 - RR42_RS02580 0.63 -1.1
580,577 - RR42_RS02580 0.63 -2.9
580,583 + RR42_RS02580 0.64 +0.5
580,583 + RR42_RS02580 0.64 -4.0
580,714 + RR42_RS02580 0.82 -4.3
580,714 + RR42_RS02580 0.82 -4.8
580,715 - RR42_RS02580 0.82 -3.9
580,729 + RR42_RS02580 0.84 -1.8
580,759 + RR42_RS02580 0.88 -0.9
580,760 - RR42_RS02580 0.88 -0.1
580,760 - RR42_RS02580 0.88 -2.5
580,760 - RR42_RS02580 0.88 +0.5
580,843 + +2.1
580,843 + -3.8
580,843 + +1.2
580,844 - -3.1
580,844 - -0.6
580,844 - -2.1
580,863 + -3.3
580,863 + -0.2
580,863 + +3.8
580,863 + -2.2
580,864 - +0.4
580,864 - -3.1
580,864 - -0.1
580,864 - +2.0
580,864 - -2.2
580,865 + -2.5
580,865 + +1.7
580,865 + -2.9
580,865 + +0.7
580,865 + -1.5
580,865 + -2.6
580,866 - -1.6
580,866 - -0.9
580,866 - -3.3
580,866 - -0.4
580,866 - -1.1
580,866 - -0.3
580,866 - +0.6
580,866 - -0.3
581,037 + RR42_RS02585 0.26 -4.2
581,037 + RR42_RS02585 0.26 -1.1
581,037 + RR42_RS02585 0.26 -1.4
581,038 - RR42_RS02585 0.26 -1.2
581,038 - RR42_RS02585 0.26 +0.1

Or see this region's nucleotide sequence