Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02570

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02565 and RR42_RS02570 are separated by 177 nucleotidesRR42_RS02570 and RR42_RS02575 are separated by 364 nucleotides RR42_RS02565: RR42_RS02565 - LysR family transcriptional regulator, at 576,333 to 577,304 _RS02565 RR42_RS02570: RR42_RS02570 - glutamate dehydrogenase, at 577,482 to 578,789 _RS02570 RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053 _RS02575 Position (kb) 577 578 579Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 576.526 kb on - strand, within RR42_RS02565at 576.526 kb on - strand, within RR42_RS02565at 576.772 kb on - strand, within RR42_RS02565at 576.772 kb on - strand, within RR42_RS02565at 576.792 kb on - strand, within RR42_RS02565at 576.813 kb on + strand, within RR42_RS02565at 576.852 kb on + strand, within RR42_RS02565at 576.852 kb on + strand, within RR42_RS02565at 576.886 kb on - strand, within RR42_RS02565at 576.930 kb on + strand, within RR42_RS02565at 576.930 kb on + strand, within RR42_RS02565at 576.930 kb on + strand, within RR42_RS02565at 576.931 kb on - strand, within RR42_RS02565at 576.931 kb on - strand, within RR42_RS02565at 576.932 kb on + strand, within RR42_RS02565at 576.932 kb on + strand, within RR42_RS02565at 576.933 kb on - strand, within RR42_RS02565at 577.012 kb on - strand, within RR42_RS02565at 577.340 kb on + strandat 577.341 kb on - strandat 577.341 kb on - strandat 577.572 kb on + strandat 577.573 kb on - strandat 577.846 kb on - strand, within RR42_RS02570at 577.846 kb on - strand, within RR42_RS02570at 577.865 kb on + strand, within RR42_RS02570at 577.923 kb on + strand, within RR42_RS02570at 577.924 kb on - strand, within RR42_RS02570at 577.924 kb on - strand, within RR42_RS02570at 577.924 kb on - strand, within RR42_RS02570at 577.924 kb on - strand, within RR42_RS02570at 577.925 kb on + strand, within RR42_RS02570at 577.925 kb on + strand, within RR42_RS02570at 577.926 kb on - strand, within RR42_RS02570at 578.022 kb on + strand, within RR42_RS02570at 578.022 kb on + strand, within RR42_RS02570at 578.023 kb on - strand, within RR42_RS02570at 578.023 kb on - strand, within RR42_RS02570at 578.023 kb on - strand, within RR42_RS02570at 578.283 kb on + strand, within RR42_RS02570at 578.283 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.322 kb on + strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.323 kb on - strand, within RR42_RS02570at 578.535 kb on - strand, within RR42_RS02570at 578.586 kb on + strand, within RR42_RS02570at 578.599 kb on + strand, within RR42_RS02570at 578.600 kb on - strand, within RR42_RS02570at 578.712 kb on - strandat 578.850 kb on + strandat 578.901 kb on + strandat 578.901 kb on + strandat 578.902 kb on - strandat 579.091 kb on - strandat 579.091 kb on - strandat 579.091 kb on - strandat 579.153 kb on + strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.343 kb on + strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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576,526 - RR42_RS02565 0.20 +2.0
576,526 - RR42_RS02565 0.20 -0.5
576,772 - RR42_RS02565 0.45 +1.8
576,772 - RR42_RS02565 0.45 +1.4
576,792 - RR42_RS02565 0.47 -2.4
576,813 + RR42_RS02565 0.49 +0.1
576,852 + RR42_RS02565 0.53 -4.0
576,852 + RR42_RS02565 0.53 -2.4
576,886 - RR42_RS02565 0.57 +1.3
576,930 + RR42_RS02565 0.61 -0.6
576,930 + RR42_RS02565 0.61 +0.5
576,930 + RR42_RS02565 0.61 -2.4
576,931 - RR42_RS02565 0.62 +0.6
576,931 - RR42_RS02565 0.62 +0.6
576,932 + RR42_RS02565 0.62 +2.9
576,932 + RR42_RS02565 0.62 +1.6
576,933 - RR42_RS02565 0.62 +1.7
577,012 - RR42_RS02565 0.70 +2.8
577,340 + -1.2
577,341 - -0.5
577,341 - -3.6
577,572 + -0.8
577,573 - -0.7
577,846 - RR42_RS02570 0.28 -2.6
577,846 - RR42_RS02570 0.28 +0.4
577,865 + RR42_RS02570 0.29 +0.3
577,923 + RR42_RS02570 0.34 -2.1
577,924 - RR42_RS02570 0.34 -1.2
577,924 - RR42_RS02570 0.34 +1.6
577,924 - RR42_RS02570 0.34 -1.1
577,924 - RR42_RS02570 0.34 -3.4
577,925 + RR42_RS02570 0.34 -1.1
577,925 + RR42_RS02570 0.34 +2.1
577,926 - RR42_RS02570 0.34 -0.2
578,022 + RR42_RS02570 0.41 -4.6
578,022 + RR42_RS02570 0.41 -0.9
578,023 - RR42_RS02570 0.41 +0.4
578,023 - RR42_RS02570 0.41 -2.5
578,023 - RR42_RS02570 0.41 -1.7
578,283 + RR42_RS02570 0.61 +1.2
578,283 + RR42_RS02570 0.61 -0.0
578,322 + RR42_RS02570 0.64 +1.7
578,322 + RR42_RS02570 0.64 -0.5
578,322 + RR42_RS02570 0.64 +0.5
578,323 - RR42_RS02570 0.64 +0.5
578,323 - RR42_RS02570 0.64 +0.5
578,323 - RR42_RS02570 0.64 +1.2
578,535 - RR42_RS02570 0.81 -1.3
578,586 + RR42_RS02570 0.84 -0.2
578,599 + RR42_RS02570 0.85 -0.7
578,600 - RR42_RS02570 0.85 -0.2
578,712 - +1.5
578,850 + -1.6
578,901 + -0.3
578,901 + -0.6
578,902 - -3.0
579,091 - +2.1
579,091 - +0.9
579,091 - -0.9
579,153 + -2.9
579,154 - +1.3
579,154 - +0.7
579,154 - -4.4
579,271 - RR42_RS02575 0.13 +1.1
579,271 - RR42_RS02575 0.13 -1.9
579,271 - RR42_RS02575 0.13 -0.4
579,307 + RR42_RS02575 0.17 -3.0
579,307 + RR42_RS02575 0.17 -0.5
579,308 - RR42_RS02575 0.17 +1.1
579,308 - RR42_RS02575 0.17 -2.0
579,343 + RR42_RS02575 0.21 -2.3
579,344 - RR42_RS02575 0.21 +1.0
579,344 - RR42_RS02575 0.21 -0.0

Or see this region's nucleotide sequence