Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02535 and RR42_RS02540 are separated by 296 nucleotides RR42_RS02540 and RR42_RS02545 overlap by 4 nucleotides RR42_RS02545 and RR42_RS02550 are separated by 23 nucleotides
RR42_RS02535: RR42_RS02535 - metal ABC transporter permease, at 570,092 to 571,987
_RS02535
RR42_RS02540: RR42_RS02540 - taurine ABC transporter permease, at 572,284 to 573,306
_RS02540
RR42_RS02545: RR42_RS02545 - nitrate ABC transporter ATP-binding protein, at 573,303 to 574,166
_RS02545
RR42_RS02550: RR42_RS02550 - ABC transporter permease, at 574,190 to 574,954
_RS02550
Position (kb) 572
573
574 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 571.346 kb on + strand, within RR42_RS02535 at 571.346 kb on + strand, within RR42_RS02535 at 571.346 kb on + strand, within RR42_RS02535 at 571.469 kb on + strand, within RR42_RS02535 at 571.469 kb on + strand, within RR42_RS02535 at 571.469 kb on + strand, within RR42_RS02535 at 571.473 kb on - strand, within RR42_RS02535 at 571.473 kb on - strand, within RR42_RS02535 at 571.574 kb on + strand, within RR42_RS02535 at 572.079 kb on + strand at 572.079 kb on + strand at 572.080 kb on - strand at 572.080 kb on - strand at 572.089 kb on - strand at 572.157 kb on - strand at 572.157 kb on - strand at 572.157 kb on - strand at 572.181 kb on - strand at 572.434 kb on + strand, within RR42_RS02540 at 572.435 kb on - strand, within RR42_RS02540 at 572.609 kb on - strand, within RR42_RS02540 at 572.917 kb on + strand, within RR42_RS02540 at 573.268 kb on + strand at 573.269 kb on - strand at 573.269 kb on - strand at 573.733 kb on - strand, within RR42_RS02545 at 573.733 kb on - strand, within RR42_RS02545 at 573.792 kb on + strand, within RR42_RS02545 at 573.793 kb on - strand, within RR42_RS02545 at 574.101 kb on - strand at 574.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 571,346 + RR42_RS02535 0.66 -1.4 571,346 + RR42_RS02535 0.66 +1.5 571,346 + RR42_RS02535 0.66 +1.6 571,469 + RR42_RS02535 0.73 +0.2 571,469 + RR42_RS02535 0.73 +2.2 571,469 + RR42_RS02535 0.73 +0.3 571,473 - RR42_RS02535 0.73 +0.4 571,473 - RR42_RS02535 0.73 -1.7 571,574 + RR42_RS02535 0.78 -2.4 572,079 + +2.1 572,079 + -3.9 572,080 - +0.7 572,080 - -0.9 572,089 - -0.4 572,157 - +1.2 572,157 - -0.2 572,157 - +0.7 572,181 - -0.5 572,434 + RR42_RS02540 0.15 +1.5 572,435 - RR42_RS02540 0.15 -0.4 572,609 - RR42_RS02540 0.32 +1.7 572,917 + RR42_RS02540 0.62 -0.1 573,268 + -4.4 573,269 - -1.4 573,269 - -2.0 573,733 - RR42_RS02545 0.50 -2.6 573,733 - RR42_RS02545 0.50 -1.2 573,792 + RR42_RS02545 0.57 +0.0 573,793 - RR42_RS02545 0.57 -0.7 574,101 - -3.0 574,101 - -3.7
Or see this region's nucleotide sequence