Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02510 and RR42_RS02515 are separated by 18 nucleotides RR42_RS02515 and RR42_RS02520 are separated by 144 nucleotides
RR42_RS02510: RR42_RS02510 - 3-hydroxyacyl-CoA dehydrogenase, at 563,889 to 566,315
_RS02510
RR42_RS02515: RR42_RS02515 - acetyl-CoA acetyltransferase, at 566,334 to 567,533
_RS02515
RR42_RS02520: RR42_RS02520 - hypothetical protein, at 567,678 to 568,634
_RS02520
Position (kb) 566
567
568 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 565.340 kb on - strand, within RR42_RS02510 at 565.340 kb on - strand, within RR42_RS02510 at 565.635 kb on + strand, within RR42_RS02510 at 565.635 kb on + strand, within RR42_RS02510 at 565.737 kb on + strand, within RR42_RS02510 at 565.737 kb on + strand, within RR42_RS02510 at 565.737 kb on + strand, within RR42_RS02510 at 565.737 kb on + strand, within RR42_RS02510 at 565.738 kb on - strand, within RR42_RS02510 at 565.846 kb on - strand, within RR42_RS02510 at 565.846 kb on - strand, within RR42_RS02510 at 566.358 kb on + strand at 566.358 kb on + strand at 566.358 kb on + strand at 566.358 kb on + strand at 566.358 kb on + strand at 566.359 kb on - strand at 566.359 kb on - strand at 567.469 kb on - strand at 567.515 kb on + strand at 567.575 kb on + strand at 567.596 kb on + strand at 567.621 kb on - strand at 567.621 kb on - strand at 567.828 kb on + strand, within RR42_RS02520 at 567.828 kb on + strand, within RR42_RS02520 at 567.978 kb on + strand, within RR42_RS02520 at 567.979 kb on - strand, within RR42_RS02520 at 567.979 kb on - strand, within RR42_RS02520 at 568.202 kb on + strand, within RR42_RS02520 at 568.202 kb on + strand, within RR42_RS02520 at 568.203 kb on - strand, within RR42_RS02520 at 568.230 kb on + strand, within RR42_RS02520 at 568.231 kb on - strand, within RR42_RS02520 at 568.236 kb on + strand, within RR42_RS02520 at 568.236 kb on + strand, within RR42_RS02520 at 568.237 kb on - strand, within RR42_RS02520 at 568.284 kb on + strand, within RR42_RS02520 at 568.326 kb on - strand, within RR42_RS02520 at 568.326 kb on - strand, within RR42_RS02520 at 568.455 kb on + strand, within RR42_RS02520 at 568.455 kb on + strand, within RR42_RS02520 at 568.494 kb on + strand, within RR42_RS02520 at 568.495 kb on - strand, within RR42_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 565,340 - RR42_RS02510 0.60 -1.4 565,340 - RR42_RS02510 0.60 -0.6 565,635 + RR42_RS02510 0.72 +1.9 565,635 + RR42_RS02510 0.72 +0.4 565,737 + RR42_RS02510 0.76 +0.8 565,737 + RR42_RS02510 0.76 +1.0 565,737 + RR42_RS02510 0.76 +0.4 565,737 + RR42_RS02510 0.76 +1.8 565,738 - RR42_RS02510 0.76 +0.8 565,846 - RR42_RS02510 0.81 +0.5 565,846 - RR42_RS02510 0.81 -3.0 566,358 + +0.2 566,358 + -0.9 566,358 + -0.1 566,358 + +1.9 566,358 + -2.8 566,359 - +0.4 566,359 - +0.7 567,469 - +0.6 567,515 + +1.8 567,575 + +0.5 567,596 + +1.1 567,621 - +0.5 567,621 - +1.8 567,828 + RR42_RS02520 0.16 -4.3 567,828 + RR42_RS02520 0.16 +1.9 567,978 + RR42_RS02520 0.31 -1.0 567,979 - RR42_RS02520 0.31 +0.1 567,979 - RR42_RS02520 0.31 +1.9 568,202 + RR42_RS02520 0.55 -3.0 568,202 + RR42_RS02520 0.55 +1.1 568,203 - RR42_RS02520 0.55 +0.5 568,230 + RR42_RS02520 0.58 -0.6 568,231 - RR42_RS02520 0.58 +0.7 568,236 + RR42_RS02520 0.58 -2.2 568,236 + RR42_RS02520 0.58 +1.2 568,237 - RR42_RS02520 0.58 +0.9 568,284 + RR42_RS02520 0.63 +0.7 568,326 - RR42_RS02520 0.68 +2.5 568,326 - RR42_RS02520 0.68 +0.5 568,455 + RR42_RS02520 0.81 +1.2 568,455 + RR42_RS02520 0.81 +2.6 568,494 + RR42_RS02520 0.85 -1.4 568,495 - RR42_RS02520 0.85 +1.0
Or see this region's nucleotide sequence