Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02505

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02500 and RR42_RS02505 are separated by 73 nucleotidesRR42_RS02505 and RR42_RS02510 are separated by 195 nucleotides RR42_RS02500: RR42_RS02500 - TetR family transcriptional regulator, at 561,242 to 561,832 _RS02500 RR42_RS02505: RR42_RS02505 - acyl-CoA dehydrogenase, at 561,906 to 563,693 _RS02505 RR42_RS02510: RR42_RS02510 - 3-hydroxyacyl-CoA dehydrogenase, at 563,889 to 566,315 _RS02510 Position (kb) 561 562 563 564Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 560.906 kb on + strandat 560.907 kb on - strandat 560.907 kb on - strandat 561.065 kb on - strandat 561.129 kb on + strandat 561.129 kb on + strandat 561.130 kb on - strandat 561.142 kb on + strandat 561.142 kb on + strandat 561.552 kb on - strand, within RR42_RS02500at 561.552 kb on - strand, within RR42_RS02500at 561.735 kb on + strand, within RR42_RS02500at 561.805 kb on + strandat 561.821 kb on + strandat 561.826 kb on + strandat 561.826 kb on + strandat 561.915 kb on + strandat 561.915 kb on + strandat 561.915 kb on + strandat 562.103 kb on + strand, within RR42_RS02505at 562.108 kb on - strand, within RR42_RS02505at 562.108 kb on - strand, within RR42_RS02505at 562.108 kb on - strand, within RR42_RS02505at 562.155 kb on + strand, within RR42_RS02505at 562.155 kb on + strand, within RR42_RS02505at 562.165 kb on - strand, within RR42_RS02505at 562.165 kb on - strand, within RR42_RS02505at 562.206 kb on + strand, within RR42_RS02505at 562.226 kb on + strand, within RR42_RS02505at 562.248 kb on + strand, within RR42_RS02505at 562.248 kb on + strand, within RR42_RS02505at 562.249 kb on - strand, within RR42_RS02505at 562.249 kb on - strand, within RR42_RS02505at 562.249 kb on - strand, within RR42_RS02505at 562.286 kb on - strand, within RR42_RS02505at 562.288 kb on - strand, within RR42_RS02505at 562.312 kb on - strand, within RR42_RS02505at 562.356 kb on + strand, within RR42_RS02505at 562.356 kb on + strand, within RR42_RS02505at 562.357 kb on - strand, within RR42_RS02505at 562.357 kb on - strand, within RR42_RS02505at 562.357 kb on - strand, within RR42_RS02505at 562.474 kb on - strand, within RR42_RS02505at 563.196 kb on + strand, within RR42_RS02505at 563.196 kb on + strand, within RR42_RS02505at 563.197 kb on - strand, within RR42_RS02505at 563.197 kb on - strand, within RR42_RS02505at 563.226 kb on + strand, within RR42_RS02505at 563.226 kb on + strand, within RR42_RS02505at 563.227 kb on - strand, within RR42_RS02505at 563.227 kb on - strand, within RR42_RS02505at 563.475 kb on + strand, within RR42_RS02505at 563.475 kb on + strand, within RR42_RS02505at 563.476 kb on - strand, within RR42_RS02505at 563.476 kb on - strand, within RR42_RS02505at 563.476 kb on - strand, within RR42_RS02505at 563.508 kb on + strand, within RR42_RS02505at 563.528 kb on + strandat 563.568 kb on + strandat 563.569 kb on - strandat 563.569 kb on - strandat 563.598 kb on + strandat 563.598 kb on + strandat 563.712 kb on + strandat 563.724 kb on - strandat 563.740 kb on - strandat 563.740 kb on - strandat 563.772 kb on - strandat 563.803 kb on + strandat 563.804 kb on - strandat 563.878 kb on + strandat 563.878 kb on + strandat 564.117 kb on + strandat 564.202 kb on - strand, within RR42_RS02510at 564.252 kb on - strand, within RR42_RS02510at 564.345 kb on + strand, within RR42_RS02510at 564.346 kb on - strand, within RR42_RS02510at 564.528 kb on + strand, within RR42_RS02510at 564.528 kb on + strand, within RR42_RS02510at 564.690 kb on + strand, within RR42_RS02510at 564.690 kb on + strand, within RR42_RS02510at 564.690 kb on + strand, within RR42_RS02510

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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560,906 + -0.3
560,907 - -0.2
560,907 - -2.8
561,065 - -2.0
561,129 + -1.0
561,129 + -3.2
561,130 - +0.2
561,142 + -2.5
561,142 + +1.1
561,552 - RR42_RS02500 0.52 -1.4
561,552 - RR42_RS02500 0.52 -2.1
561,735 + RR42_RS02500 0.83 -3.1
561,805 + -3.0
561,821 + -0.3
561,826 + +0.6
561,826 + -2.9
561,915 + +0.9
561,915 + -0.7
561,915 + -0.2
562,103 + RR42_RS02505 0.11 -0.3
562,108 - RR42_RS02505 0.11 -1.4
562,108 - RR42_RS02505 0.11 -3.5
562,108 - RR42_RS02505 0.11 -0.1
562,155 + RR42_RS02505 0.14 -3.6
562,155 + RR42_RS02505 0.14 +2.3
562,165 - RR42_RS02505 0.14 -2.9
562,165 - RR42_RS02505 0.14 -0.5
562,206 + RR42_RS02505 0.17 +0.0
562,226 + RR42_RS02505 0.18 -0.9
562,248 + RR42_RS02505 0.19 +2.3
562,248 + RR42_RS02505 0.19 +1.1
562,249 - RR42_RS02505 0.19 +1.0
562,249 - RR42_RS02505 0.19 +0.7
562,249 - RR42_RS02505 0.19 +1.0
562,286 - RR42_RS02505 0.21 -0.2
562,288 - RR42_RS02505 0.21 -0.2
562,312 - RR42_RS02505 0.23 +1.1
562,356 + RR42_RS02505 0.25 -0.0
562,356 + RR42_RS02505 0.25 -2.1
562,357 - RR42_RS02505 0.25 -0.2
562,357 - RR42_RS02505 0.25 +1.9
562,357 - RR42_RS02505 0.25 +0.5
562,474 - RR42_RS02505 0.32 -0.0
563,196 + RR42_RS02505 0.72 +1.0
563,196 + RR42_RS02505 0.72 +0.2
563,197 - RR42_RS02505 0.72 +0.1
563,197 - RR42_RS02505 0.72 -1.1
563,226 + RR42_RS02505 0.74 +0.2
563,226 + RR42_RS02505 0.74 -0.4
563,227 - RR42_RS02505 0.74 -0.2
563,227 - RR42_RS02505 0.74 +0.4
563,475 + RR42_RS02505 0.88 +1.2
563,475 + RR42_RS02505 0.88 -1.2
563,476 - RR42_RS02505 0.88 -0.5
563,476 - RR42_RS02505 0.88 +0.0
563,476 - RR42_RS02505 0.88 +2.4
563,508 + RR42_RS02505 0.90 -1.9
563,528 + -3.3
563,568 + +2.6
563,569 - -0.2
563,569 - +0.5
563,598 + -0.9
563,598 + +0.8
563,712 + -1.3
563,724 - -2.4
563,740 - -2.3
563,740 - -0.2
563,772 - +2.3
563,803 + +2.2
563,804 - +2.7
563,878 + -2.2
563,878 + +2.1
564,117 + +2.1
564,202 - RR42_RS02510 0.13 +1.4
564,252 - RR42_RS02510 0.15 -0.8
564,345 + RR42_RS02510 0.19 +1.1
564,346 - RR42_RS02510 0.19 -2.0
564,528 + RR42_RS02510 0.26 +1.7
564,528 + RR42_RS02510 0.26 -4.5
564,690 + RR42_RS02510 0.33 -3.2
564,690 + RR42_RS02510 0.33 -1.3
564,690 + RR42_RS02510 0.33 +0.5

Or see this region's nucleotide sequence