Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02400

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS02390 and RR42_RS02395 are separated by 52 nucleotidesRR42_RS02395 and RR42_RS02400 are separated by 42 nucleotidesRR42_RS02400 and RR42_RS02405 are separated by 76 nucleotides RR42_RS02390: RR42_RS02390 - ABC transporter ATP-binding protein, at 538,203 to 540,086 _RS02390 RR42_RS02395: RR42_RS02395 - hypothetical protein, at 540,139 to 540,552 _RS02395 RR42_RS02400: RR42_RS02400 - ubiquinone biosynthesis methyltransferase UbiE, at 540,595 to 541,326 _RS02400 RR42_RS02405: RR42_RS02405 - membrane protein, at 541,403 to 542,404 _RS02405 Position (kb) 540 541 542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 539.634 kb on + strand, within RR42_RS02390at 539.901 kb on + strandat 539.902 kb on - strandat 540.084 kb on + strandat 540.253 kb on + strand, within RR42_RS02395at 540.367 kb on + strand, within RR42_RS02395at 540.367 kb on + strand, within RR42_RS02395at 540.367 kb on + strand, within RR42_RS02395at 540.367 kb on + strand, within RR42_RS02395at 540.402 kb on + strand, within RR42_RS02395at 540.412 kb on + strand, within RR42_RS02395at 540.470 kb on - strand, within RR42_RS02395at 541.332 kb on + strandat 541.335 kb on - strandat 541.378 kb on + strandat 541.633 kb on + strand, within RR42_RS02405at 541.634 kb on - strand, within RR42_RS02405at 542.078 kb on + strand, within RR42_RS02405at 542.078 kb on + strand, within RR42_RS02405at 542.078 kb on + strand, within RR42_RS02405at 542.078 kb on + strand, within RR42_RS02405at 542.079 kb on - strand, within RR42_RS02405at 542.081 kb on + strand, within RR42_RS02405at 542.081 kb on + strand, within RR42_RS02405at 542.081 kb on + strand, within RR42_RS02405at 542.081 kb on + strand, within RR42_RS02405at 542.082 kb on - strand, within RR42_RS02405at 542.082 kb on - strand, within RR42_RS02405at 542.082 kb on - strand, within RR42_RS02405at 542.085 kb on + strand, within RR42_RS02405at 542.085 kb on + strand, within RR42_RS02405at 542.086 kb on - strand, within RR42_RS02405at 542.086 kb on - strand, within RR42_RS02405

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
539,634 + RR42_RS02390 0.76 -1.2
539,901 + -0.2
539,902 - -1.3
540,084 + +1.3
540,253 + RR42_RS02395 0.28 +1.0
540,367 + RR42_RS02395 0.55 +0.4
540,367 + RR42_RS02395 0.55 -0.2
540,367 + RR42_RS02395 0.55 +1.1
540,367 + RR42_RS02395 0.55 -1.2
540,402 + RR42_RS02395 0.64 +1.4
540,412 + RR42_RS02395 0.66 +0.2
540,470 - RR42_RS02395 0.80 +2.3
541,332 + -1.8
541,335 - -4.4
541,378 + -0.1
541,633 + RR42_RS02405 0.23 -0.1
541,634 - RR42_RS02405 0.23 +1.1
542,078 + RR42_RS02405 0.67 -3.2
542,078 + RR42_RS02405 0.67 -0.9
542,078 + RR42_RS02405 0.67 -3.6
542,078 + RR42_RS02405 0.67 -0.6
542,079 - RR42_RS02405 0.67 -2.4
542,081 + RR42_RS02405 0.68 -2.7
542,081 + RR42_RS02405 0.68 -2.2
542,081 + RR42_RS02405 0.68 -0.6
542,081 + RR42_RS02405 0.68 +1.1
542,082 - RR42_RS02405 0.68 -4.0
542,082 - RR42_RS02405 0.68 +1.1
542,082 - RR42_RS02405 0.68 -1.1
542,085 + RR42_RS02405 0.68 -2.7
542,085 + RR42_RS02405 0.68 -0.9
542,086 - RR42_RS02405 0.68 -2.6
542,086 - RR42_RS02405 0.68 +1.3

Or see this region's nucleotide sequence