Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02390 and RR42_RS02395 are separated by 52 nucleotides RR42_RS02395 and RR42_RS02400 are separated by 42 nucleotides RR42_RS02400 and RR42_RS02405 are separated by 76 nucleotides
RR42_RS02390: RR42_RS02390 - ABC transporter ATP-binding protein, at 538,203 to 540,086
_RS02390
RR42_RS02395: RR42_RS02395 - hypothetical protein, at 540,139 to 540,552
_RS02395
RR42_RS02400: RR42_RS02400 - ubiquinone biosynthesis methyltransferase UbiE, at 540,595 to 541,326
_RS02400
RR42_RS02405: RR42_RS02405 - membrane protein, at 541,403 to 542,404
_RS02405
Position (kb) 540
541 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 539.139 kb on + strand, within RR42_RS02390 at 539.139 kb on + strand, within RR42_RS02390 at 539.232 kb on + strand, within RR42_RS02390 at 539.232 kb on + strand, within RR42_RS02390 at 539.232 kb on + strand, within RR42_RS02390 at 539.291 kb on + strand, within RR42_RS02390 at 539.292 kb on - strand, within RR42_RS02390 at 539.587 kb on + strand, within RR42_RS02390 at 539.588 kb on - strand, within RR42_RS02390 at 539.588 kb on - strand, within RR42_RS02390 at 539.634 kb on + strand, within RR42_RS02390 at 539.901 kb on + strand at 539.902 kb on - strand at 540.084 kb on + strand at 540.253 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.367 kb on + strand, within RR42_RS02395 at 540.402 kb on + strand, within RR42_RS02395 at 540.412 kb on + strand, within RR42_RS02395 at 540.470 kb on - strand, within RR42_RS02395 at 541.332 kb on + strand at 541.335 kb on - strand at 541.378 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 539,139 + RR42_RS02390 0.50 -3.2 539,139 + RR42_RS02390 0.50 +0.9 539,232 + RR42_RS02390 0.55 -1.4 539,232 + RR42_RS02390 0.55 +0.1 539,232 + RR42_RS02390 0.55 -1.5 539,291 + RR42_RS02390 0.58 +1.3 539,292 - RR42_RS02390 0.58 +0.3 539,587 + RR42_RS02390 0.73 -0.8 539,588 - RR42_RS02390 0.74 -0.3 539,588 - RR42_RS02390 0.74 +1.7 539,634 + RR42_RS02390 0.76 -1.2 539,901 + -0.2 539,902 - -1.3 540,084 + +1.3 540,253 + RR42_RS02395 0.28 +1.0 540,367 + RR42_RS02395 0.55 +0.4 540,367 + RR42_RS02395 0.55 -0.2 540,367 + RR42_RS02395 0.55 +1.1 540,367 + RR42_RS02395 0.55 -1.2 540,402 + RR42_RS02395 0.64 +1.4 540,412 + RR42_RS02395 0.66 +0.2 540,470 - RR42_RS02395 0.80 +2.3 541,332 + -1.8 541,335 - -4.4 541,378 + -0.1
Or see this region's nucleotide sequence