Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02380 and RR42_RS02385 are separated by 70 nucleotides RR42_RS02385 and RR42_RS02390 are separated by 170 nucleotides
RR42_RS02380: RR42_RS02380 - FAD-linked oxidase, at 533,553 to 537,527
_RS02380
RR42_RS02385: RR42_RS02385 - hydrolase, at 537,598 to 538,032
_RS02385
RR42_RS02390: RR42_RS02390 - ABC transporter ATP-binding protein, at 538,203 to 540,086
_RS02390
Position (kb) 537
538
539 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 536.740 kb on - strand, within RR42_RS02380 at 536.813 kb on - strand, within RR42_RS02380 at 536.813 kb on - strand, within RR42_RS02380 at 536.841 kb on + strand, within RR42_RS02380 at 536.950 kb on - strand, within RR42_RS02380 at 536.950 kb on - strand, within RR42_RS02380 at 536.992 kb on - strand, within RR42_RS02380 at 536.992 kb on - strand, within RR42_RS02380 at 537.061 kb on - strand, within RR42_RS02380 at 537.108 kb on + strand, within RR42_RS02380 at 537.109 kb on - strand, within RR42_RS02380 at 537.109 kb on - strand, within RR42_RS02380 at 537.114 kb on + strand, within RR42_RS02380 at 537.114 kb on + strand, within RR42_RS02380 at 537.115 kb on - strand, within RR42_RS02380 at 537.115 kb on - strand, within RR42_RS02380 at 537.115 kb on - strand, within RR42_RS02380 at 537.115 kb on - strand, within RR42_RS02380 at 537.396 kb on + strand at 537.859 kb on - strand, within RR42_RS02385 at 537.882 kb on + strand, within RR42_RS02385 at 537.883 kb on - strand, within RR42_RS02385 at 538.130 kb on - strand at 538.130 kb on - strand at 538.311 kb on + strand at 538.311 kb on + strand at 538.312 kb on - strand at 538.386 kb on + strand at 538.387 kb on - strand at 538.387 kb on - strand at 538.388 kb on + strand at 538.388 kb on + strand at 538.389 kb on - strand at 538.389 kb on - strand at 538.389 kb on - strand at 538.426 kb on - strand, within RR42_RS02390 at 538.449 kb on + strand, within RR42_RS02390 at 538.449 kb on + strand, within RR42_RS02390 at 538.450 kb on - strand, within RR42_RS02390 at 538.450 kb on - strand, within RR42_RS02390 at 538.502 kb on + strand, within RR42_RS02390 at 538.503 kb on - strand, within RR42_RS02390 at 538.516 kb on + strand, within RR42_RS02390 at 538.517 kb on - strand, within RR42_RS02390 at 538.517 kb on - strand, within RR42_RS02390 at 538.517 kb on - strand, within RR42_RS02390 at 538.527 kb on + strand, within RR42_RS02390 at 538.527 kb on + strand, within RR42_RS02390 at 538.528 kb on - strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.530 kb on + strand, within RR42_RS02390 at 538.531 kb on - strand, within RR42_RS02390 at 538.608 kb on + strand, within RR42_RS02390 at 538.608 kb on + strand, within RR42_RS02390 at 538.608 kb on + strand, within RR42_RS02390 at 538.612 kb on - strand, within RR42_RS02390 at 538.618 kb on + strand, within RR42_RS02390 at 538.619 kb on - strand, within RR42_RS02390 at 538.619 kb on - strand, within RR42_RS02390 at 538.815 kb on + strand, within RR42_RS02390 at 538.816 kb on - strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.817 kb on + strand, within RR42_RS02390 at 538.818 kb on - strand, within RR42_RS02390 at 538.818 kb on - strand, within RR42_RS02390 at 538.818 kb on - strand, within RR42_RS02390
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 536,740 - RR42_RS02380 0.80 -1.1 536,813 - RR42_RS02380 0.82 -1.0 536,813 - RR42_RS02380 0.82 -1.5 536,841 + RR42_RS02380 0.83 -1.5 536,950 - RR42_RS02380 0.85 +0.1 536,950 - RR42_RS02380 0.85 -1.9 536,992 - RR42_RS02380 0.87 -1.3 536,992 - RR42_RS02380 0.87 -0.5 537,061 - RR42_RS02380 0.88 -3.4 537,108 + RR42_RS02380 0.89 +1.2 537,109 - RR42_RS02380 0.89 +0.1 537,109 - RR42_RS02380 0.89 -0.3 537,114 + RR42_RS02380 0.90 -0.1 537,114 + RR42_RS02380 0.90 +2.4 537,115 - RR42_RS02380 0.90 +0.9 537,115 - RR42_RS02380 0.90 +1.3 537,115 - RR42_RS02380 0.90 -3.9 537,115 - RR42_RS02380 0.90 -2.6 537,396 + +0.7 537,859 - RR42_RS02385 0.60 -3.6 537,882 + RR42_RS02385 0.65 -1.4 537,883 - RR42_RS02385 0.66 -1.1 538,130 - +0.1 538,130 - +0.8 538,311 + +1.6 538,311 + +4.4 538,312 - +0.8 538,386 + +0.3 538,387 - +0.3 538,387 - -2.5 538,388 + +2.6 538,388 + -0.1 538,389 - -1.4 538,389 - -1.3 538,389 - +0.4 538,426 - RR42_RS02390 0.12 +0.5 538,449 + RR42_RS02390 0.13 +0.6 538,449 + RR42_RS02390 0.13 -1.7 538,450 - RR42_RS02390 0.13 +2.1 538,450 - RR42_RS02390 0.13 -0.3 538,502 + RR42_RS02390 0.16 +2.0 538,503 - RR42_RS02390 0.16 -2.8 538,516 + RR42_RS02390 0.17 +0.4 538,517 - RR42_RS02390 0.17 +2.2 538,517 - RR42_RS02390 0.17 -1.5 538,517 - RR42_RS02390 0.17 -2.6 538,527 + RR42_RS02390 0.17 +0.4 538,527 + RR42_RS02390 0.17 -0.6 538,528 - RR42_RS02390 0.17 +1.3 538,530 + RR42_RS02390 0.17 +2.4 538,530 + RR42_RS02390 0.17 +0.5 538,530 + RR42_RS02390 0.17 +1.2 538,530 + RR42_RS02390 0.17 -1.2 538,531 - RR42_RS02390 0.17 +2.4 538,608 + RR42_RS02390 0.21 +1.1 538,608 + RR42_RS02390 0.21 +0.7 538,608 + RR42_RS02390 0.21 -1.9 538,612 - RR42_RS02390 0.22 +2.0 538,618 + RR42_RS02390 0.22 -1.3 538,619 - RR42_RS02390 0.22 -2.3 538,619 - RR42_RS02390 0.22 +1.0 538,815 + RR42_RS02390 0.32 +1.3 538,816 - RR42_RS02390 0.33 -3.0 538,817 + RR42_RS02390 0.33 -0.3 538,817 + RR42_RS02390 0.33 +1.6 538,817 + RR42_RS02390 0.33 +0.2 538,817 + RR42_RS02390 0.33 -3.2 538,817 + RR42_RS02390 0.33 -0.7 538,818 - RR42_RS02390 0.33 +0.7 538,818 - RR42_RS02390 0.33 +1.2 538,818 - RR42_RS02390 0.33 -1.9
Or see this region's nucleotide sequence