Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02200 and RR42_RS02205 are separated by 65 nucleotides RR42_RS02205 and RR42_RS02210 overlap by 4 nucleotides RR42_RS02210 and RR42_RS02215 overlap by 4 nucleotides RR42_RS02215 and RR42_RS02220 are separated by 202 nucleotides
RR42_RS02200: RR42_RS02200 - LacI family transcriptional regulator, at 489,135 to 490,130
_RS02200
RR42_RS02205: RR42_RS02205 - succinate dehydrogenase, at 490,196 to 490,549
_RS02205
RR42_RS02210: RR42_RS02210 - succinate dehydrogenase, at 490,546 to 490,899
_RS02210
RR42_RS02215: RR42_RS02215 - fumarate reductase, at 490,896 to 491,609
_RS02215
RR42_RS02220: RR42_RS02220 - LysR family transcriptional regulator, at 491,812 to 492,753
_RS02220
Position (kb) 490
491 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 489.560 kb on - strand, within RR42_RS02200 at 489.560 kb on - strand, within RR42_RS02200 at 489.759 kb on - strand, within RR42_RS02200 at 489.845 kb on + strand, within RR42_RS02200 at 489.845 kb on + strand, within RR42_RS02200 at 489.845 kb on + strand, within RR42_RS02200 at 489.846 kb on - strand, within RR42_RS02200 at 489.846 kb on - strand, within RR42_RS02200 at 489.848 kb on - strand, within RR42_RS02200 at 489.848 kb on - strand, within RR42_RS02200 at 490.197 kb on + strand at 490.197 kb on + strand at 490.510 kb on - strand, within RR42_RS02205 at 490.566 kb on - strand at 490.856 kb on + strand, within RR42_RS02210 at 490.857 kb on - strand, within RR42_RS02210 at 490.900 kb on - strand at 490.900 kb on - strand at 490.900 kb on - strand at 491.003 kb on + strand, within RR42_RS02215 at 491.004 kb on - strand, within RR42_RS02215 at 491.503 kb on + strand, within RR42_RS02215 at 491.504 kb on - strand, within RR42_RS02215 at 491.551 kb on + strand at 491.587 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 489,560 - RR42_RS02200 0.43 +0.2 489,560 - RR42_RS02200 0.43 -4.0 489,759 - RR42_RS02200 0.63 -3.1 489,845 + RR42_RS02200 0.71 -0.2 489,845 + RR42_RS02200 0.71 -0.7 489,845 + RR42_RS02200 0.71 -0.7 489,846 - RR42_RS02200 0.71 -1.1 489,846 - RR42_RS02200 0.71 +0.2 489,848 - RR42_RS02200 0.72 -1.6 489,848 - RR42_RS02200 0.72 -1.1 490,197 + +0.6 490,197 + -2.7 490,510 - RR42_RS02205 0.89 +0.1 490,566 - +1.9 490,856 + RR42_RS02210 0.88 -0.5 490,857 - RR42_RS02210 0.88 +0.1 490,900 - +0.9 490,900 - +1.2 490,900 - +1.0 491,003 + RR42_RS02215 0.15 -3.1 491,004 - RR42_RS02215 0.15 +0.1 491,503 + RR42_RS02215 0.85 -2.7 491,504 - RR42_RS02215 0.85 +0.5 491,551 + +1.6 491,587 - -2.2
Or see this region's nucleotide sequence