Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01625 and RR42_RS01630 overlap by 4 nucleotides RR42_RS01630 and RR42_RS01635 are separated by 24 nucleotides RR42_RS01635 and RR42_RS01640 are separated by 26 nucleotides
RR42_RS01625: RR42_RS01625 - long-chain fatty acid--CoA ligase, at 369,975 to 371,945
_RS01625
RR42_RS01630: RR42_RS01630 - branched-chain amino acid ABC transporter ATP-binding protein, at 371,942 to 372,865
_RS01630
RR42_RS01635: RR42_RS01635 - ABC transporter permease, at 372,890 to 373,804
_RS01635
RR42_RS01640: RR42_RS01640 - ABC transporter permease, at 373,831 to 374,907
_RS01640
Position (kb) 372
373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 371.900 kb on - strand at 371.900 kb on - strand at 371.900 kb on - strand at 372.163 kb on + strand, within RR42_RS01630 at 372.258 kb on - strand, within RR42_RS01630 at 372.924 kb on + strand at 372.974 kb on + strand at 372.975 kb on - strand at 373.019 kb on + strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.460 kb on - strand, within RR42_RS01635 at 373.460 kb on - strand, within RR42_RS01635 at 373.597 kb on + strand, within RR42_RS01635 at 373.664 kb on + strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.731 kb on - strand at 373.731 kb on - strand at 373.731 kb on - strand at 373.867 kb on + strand at 373.867 kb on + strand at 373.868 kb on - strand at 373.868 kb on - strand at 373.868 kb on - strand at 374.031 kb on + strand, within RR42_RS01640 at 374.032 kb on - strand, within RR42_RS01640 at 374.105 kb on - strand, within RR42_RS01640 at 374.152 kb on - strand, within RR42_RS01640 at 374.224 kb on + strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.570 kb on - strand, within RR42_RS01640 at 374.582 kb on - strand, within RR42_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 371,900 - -0.7 371,900 - -1.7 371,900 - -2.6 372,163 + RR42_RS01630 0.24 +0.7 372,258 - RR42_RS01630 0.34 +3.1 372,924 + -2.3 372,974 + -0.7 372,975 - -2.2 373,019 + RR42_RS01635 0.14 -2.1 373,020 - RR42_RS01635 0.14 +1.9 373,020 - RR42_RS01635 0.14 -1.0 373,020 - RR42_RS01635 0.14 -0.4 373,020 - RR42_RS01635 0.14 -0.4 373,460 - RR42_RS01635 0.62 +1.6 373,460 - RR42_RS01635 0.62 +0.3 373,597 + RR42_RS01635 0.77 +0.1 373,664 + RR42_RS01635 0.85 -1.5 373,665 - RR42_RS01635 0.85 +0.3 373,665 - RR42_RS01635 0.85 -2.1 373,665 - RR42_RS01635 0.85 -2.1 373,731 - +0.3 373,731 - +2.4 373,731 - -1.1 373,867 + +1.3 373,867 + +0.1 373,868 - -0.3 373,868 - -1.6 373,868 - +0.5 374,031 + RR42_RS01640 0.19 +0.9 374,032 - RR42_RS01640 0.19 -1.2 374,105 - RR42_RS01640 0.25 -2.5 374,152 - RR42_RS01640 0.30 +0.6 374,224 + RR42_RS01640 0.36 -3.2 374,375 - RR42_RS01640 0.51 -1.7 374,375 - RR42_RS01640 0.51 -3.1 374,570 - RR42_RS01640 0.69 -3.0 374,582 - RR42_RS01640 0.70 +0.7
Or see this region's nucleotide sequence