Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01495 and RR42_RS01500 are separated by 322 nucleotides RR42_RS01500 and RR42_RS01505 are separated by 149 nucleotides RR42_RS01505 and RR42_RS01510 are separated by 258 nucleotides
RR42_RS01495: RR42_RS01495 - diguanylate cyclase, at 337,571 to 339,352
_RS01495
RR42_RS01500: RR42_RS01500 - hypothetical protein, at 339,675 to 340,094
_RS01500
RR42_RS01505: RR42_RS01505 - tRNA-Cys, at 340,244 to 340,318
_RS01505
RR42_RS01510: RR42_RS01510 - N-acetylglutamate synthase, at 340,577 to 341,020
_RS01510
Position (kb) 339
340
341 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 338.820 kb on + strand, within RR42_RS01495 at 338.858 kb on + strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.131 kb on - strand, within RR42_RS01495 at 339.150 kb on + strand, within RR42_RS01495 at 339.275 kb on + strand at 339.275 kb on + strand at 339.275 kb on + strand at 339.336 kb on + strand at 339.337 kb on - strand at 339.337 kb on - strand at 339.340 kb on + strand at 339.341 kb on - strand at 339.482 kb on + strand at 339.482 kb on + strand at 339.482 kb on + strand at 339.519 kb on + strand at 339.562 kb on + strand at 339.563 kb on - strand at 339.633 kb on + strand at 339.642 kb on + strand at 339.912 kb on + strand, within RR42_RS01500 at 339.912 kb on + strand, within RR42_RS01500 at 339.913 kb on - strand, within RR42_RS01500 at 339.913 kb on - strand, within RR42_RS01500 at 340.161 kb on + strand at 340.162 kb on - strand at 340.162 kb on - strand at 340.285 kb on + strand, within RR42_RS01505 at 340.321 kb on - strand at 340.321 kb on - strand at 340.422 kb on - strand at 340.509 kb on + strand at 340.510 kb on - strand at 340.510 kb on - strand at 340.510 kb on - strand at 340.570 kb on - strand at 340.696 kb on + strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.697 kb on - strand, within RR42_RS01510 at 340.780 kb on - strand, within RR42_RS01510 at 340.817 kb on - strand, within RR42_RS01510 at 340.817 kb on - strand, within RR42_RS01510 at 340.896 kb on - strand, within RR42_RS01510 at 340.896 kb on - strand, within RR42_RS01510
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 338,820 + RR42_RS01495 0.70 -0.4 338,858 + RR42_RS01495 0.72 +0.4 339,131 - RR42_RS01495 0.88 -3.3 339,131 - RR42_RS01495 0.88 -2.5 339,131 - RR42_RS01495 0.88 +0.4 339,131 - RR42_RS01495 0.88 -4.7 339,150 + RR42_RS01495 0.89 +0.7 339,275 + +1.7 339,275 + +1.0 339,275 + -0.6 339,336 + +2.6 339,337 - +0.9 339,337 - -3.5 339,340 + +0.6 339,341 - +0.7 339,482 + +0.2 339,482 + +0.3 339,482 + +2.3 339,519 + +1.0 339,562 + -1.1 339,563 - -2.6 339,633 + +0.2 339,642 + +1.2 339,912 + RR42_RS01500 0.56 +1.8 339,912 + RR42_RS01500 0.56 -0.5 339,913 - RR42_RS01500 0.57 -1.2 339,913 - RR42_RS01500 0.57 +0.5 340,161 + +0.7 340,162 - +0.5 340,162 - +1.8 340,285 + RR42_RS01505 0.55 +0.3 340,321 - -1.3 340,321 - +0.7 340,422 - -3.4 340,509 + +1.5 340,510 - -0.6 340,510 - +0.8 340,510 - -1.0 340,570 - +1.5 340,696 + RR42_RS01510 0.27 -2.3 340,697 - RR42_RS01510 0.27 +0.3 340,697 - RR42_RS01510 0.27 +0.4 340,697 - RR42_RS01510 0.27 -1.2 340,780 - RR42_RS01510 0.46 -0.8 340,817 - RR42_RS01510 0.54 -2.8 340,817 - RR42_RS01510 0.54 +1.3 340,896 - RR42_RS01510 0.72 -0.2 340,896 - RR42_RS01510 0.72 -1.9
Or see this region's nucleotide sequence