Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01475

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01465 and RR42_RS01470 are separated by 56 nucleotidesRR42_RS01470 and RR42_RS01475 are separated by 224 nucleotidesRR42_RS01475 and RR42_RS01480 are separated by 1 nucleotides RR42_RS01465: RR42_RS01465 - histidine kinase, at 331,119 to 333,086 _RS01465 RR42_RS01470: RR42_RS01470 - hypothetical protein, at 333,143 to 333,856 _RS01470 RR42_RS01475: RR42_RS01475 - hypothetical protein, at 334,081 to 334,401 _RS01475 RR42_RS01480: RR42_RS01480 - hypothetical protein, at 334,403 to 335,668 _RS01480 Position (kb) 334 335Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 333.227 kb on + strand, within RR42_RS01470at 333.228 kb on - strand, within RR42_RS01470at 333.300 kb on + strand, within RR42_RS01470at 333.301 kb on - strand, within RR42_RS01470at 333.446 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.631 kb on - strand, within RR42_RS01470at 333.631 kb on - strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.815 kb on + strandat 333.816 kb on - strandat 333.928 kb on - strandat 333.958 kb on + strandat 333.959 kb on - strandat 334.066 kb on + strandat 334.066 kb on + strandat 334.066 kb on + strandat 334.097 kb on + strandat 334.098 kb on - strandat 334.098 kb on - strandat 334.098 kb on - strandat 334.253 kb on + strand, within RR42_RS01475at 334.253 kb on - strand, within RR42_RS01475at 334.254 kb on - strand, within RR42_RS01475at 334.254 kb on - strand, within RR42_RS01475at 334.258 kb on + strand, within RR42_RS01475at 334.259 kb on - strand, within RR42_RS01475at 334.259 kb on - strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.450 kb on - strandat 334.674 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.042 kb on + strand, within RR42_RS01480at 335.043 kb on - strand, within RR42_RS01480at 335.043 kb on - strand, within RR42_RS01480at 335.043 kb on - strand, within RR42_RS01480at 335.043 kb on - strand, within RR42_RS01480at 335.232 kb on + strand, within RR42_RS01480at 335.232 kb on + strand, within RR42_RS01480at 335.233 kb on - strand, within RR42_RS01480at 335.307 kb on - strand, within RR42_RS01480

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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333,227 + RR42_RS01470 0.12 -1.1
333,228 - RR42_RS01470 0.12 +1.4
333,300 + RR42_RS01470 0.22 -3.2
333,301 - RR42_RS01470 0.22 -1.6
333,446 + RR42_RS01470 0.42 +0.4
333,630 + RR42_RS01470 0.68 +0.5
333,630 + RR42_RS01470 0.68 -0.4
333,630 + RR42_RS01470 0.68 -1.0
333,631 - RR42_RS01470 0.68 -0.4
333,631 - RR42_RS01470 0.68 -1.8
333,704 + RR42_RS01470 0.79 -2.4
333,704 + RR42_RS01470 0.79 +0.2
333,704 + RR42_RS01470 0.79 -0.2
333,704 + RR42_RS01470 0.79 -3.0
333,704 + RR42_RS01470 0.79 -3.3
333,705 - RR42_RS01470 0.79 +1.2
333,705 - RR42_RS01470 0.79 +0.7
333,705 - RR42_RS01470 0.79 -2.8
333,815 + -1.4
333,816 - -0.2
333,928 - -3.0
333,958 + -0.6
333,959 - -2.8
334,066 + +2.2
334,066 + +1.1
334,066 + -2.2
334,097 + +1.0
334,098 - +1.7
334,098 - +2.4
334,098 - -2.7
334,253 + RR42_RS01475 0.54 -2.9
334,253 - RR42_RS01475 0.54 +2.0
334,254 - RR42_RS01475 0.54 +1.2
334,254 - RR42_RS01475 0.54 -1.2
334,258 + RR42_RS01475 0.55 +1.0
334,259 - RR42_RS01475 0.55 -0.9
334,259 - RR42_RS01475 0.55 +1.2
334,291 + RR42_RS01475 0.65 +0.1
334,291 + RR42_RS01475 0.65 +0.2
334,291 + RR42_RS01475 0.65 +0.0
334,291 + RR42_RS01475 0.65 -1.9
334,291 + RR42_RS01475 0.65 -0.2
334,291 + RR42_RS01475 0.65 -0.7
334,292 - RR42_RS01475 0.66 -3.0
334,292 - RR42_RS01475 0.66 +0.9
334,292 - RR42_RS01475 0.66 -1.9
334,292 - RR42_RS01475 0.66 -1.6
334,292 - RR42_RS01475 0.66 +0.6
334,450 - -1.2
334,674 + RR42_RS01480 0.21 -1.3
335,042 + RR42_RS01480 0.50 -1.9
335,042 + RR42_RS01480 0.50 +1.7
335,042 + RR42_RS01480 0.50 +0.1
335,042 + RR42_RS01480 0.50 -1.6
335,042 + RR42_RS01480 0.50 +1.5
335,042 + RR42_RS01480 0.50 -2.3
335,042 + RR42_RS01480 0.50 -0.6
335,042 + RR42_RS01480 0.50 -0.8
335,043 - RR42_RS01480 0.51 +0.9
335,043 - RR42_RS01480 0.51 +1.4
335,043 - RR42_RS01480 0.51 +0.4
335,043 - RR42_RS01480 0.51 -3.2
335,232 + RR42_RS01480 0.65 -3.6
335,232 + RR42_RS01480 0.65 -2.5
335,233 - RR42_RS01480 0.66 +1.4
335,307 - RR42_RS01480 0.71 +1.4

Or see this region's nucleotide sequence