Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01450 and RR42_RS01455 are separated by 257 nucleotides RR42_RS01455 and RR42_RS01460 are separated by 120 nucleotides
RR42_RS01450: RR42_RS01450 - hypothetical protein, at 326,030 to 326,896
_RS01450
RR42_RS01455: RR42_RS01455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 327,154 to 328,515
_RS01455
RR42_RS01460: RR42_RS01460 - glucosamine--fructose-6-phosphate aminotransferase, at 328,636 to 330,474
_RS01460
Position (kb)
327
328
329 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 326.257 kb on - strand, within RR42_RS01450 at 326.451 kb on + strand, within RR42_RS01450 at 326.520 kb on + strand, within RR42_RS01450 at 326.690 kb on + strand, within RR42_RS01450 at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.815 kb on - strand at 326.815 kb on - strand at 326.815 kb on - strand at 326.861 kb on + strand at 326.862 kb on - strand at 326.862 kb on - strand at 326.862 kb on - strand at 326.862 kb on - strand at 326.862 kb on - strand at 326.862 kb on - strand at 326.867 kb on + strand at 326.868 kb on + strand at 326.868 kb on - strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.977 kb on + strand at 326.978 kb on - strand at 326.978 kb on - strand at 326.978 kb on - strand at 326.978 kb on - strand at 326.978 kb on - strand at 326.978 kb on - strand at 327.117 kb on + strand at 327.141 kb on + strand at 327.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 326,257 - RR42_RS01450 0.26 +1.1 326,451 + RR42_RS01450 0.49 -0.3 326,520 + RR42_RS01450 0.57 +0.3 326,690 + RR42_RS01450 0.76 +2.7 326,814 + +2.0 326,814 + +0.6 326,814 + -3.6 326,814 + +0.2 326,814 + -1.0 326,814 + -0.7 326,814 + -3.2 326,814 + -1.2 326,815 - +1.3 326,815 - -0.5 326,815 - +1.8 326,861 + -1.9 326,862 - +1.2 326,862 - -1.3 326,862 - +0.7 326,862 - +1.0 326,862 - +1.3 326,862 - -1.2 326,867 + +0.4 326,868 + +2.1 326,868 - -2.7 326,977 + +1.1 326,977 + -0.9 326,977 + -1.4 326,977 + +0.5 326,977 + -1.7 326,977 + +1.0 326,978 - -2.4 326,978 - -3.0 326,978 - -2.7 326,978 - +1.6 326,978 - -0.3 326,978 - +1.6 327,117 + +1.5 327,141 + -0.6 327,141 + -4.7
Or see this region's nucleotide sequence