Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01310 and RR42_RS01315 are separated by 92 nucleotides RR42_RS01315 and RR42_RS01320 are separated by 59 nucleotides RR42_RS01320 and RR42_RS01325 are separated by 0 nucleotides RR42_RS01325 and RR42_RS01330 are separated by 20 nucleotides
RR42_RS01310: RR42_RS01310 - thiamine-phosphate pyrophosphorylase, at 298,140 to 299,273
_RS01310
RR42_RS01315: RR42_RS01315 - GNAT family acetyltransferase, at 299,366 to 299,869
_RS01315
RR42_RS01320: RR42_RS01320 - ATPase AAA, at 299,929 to 300,705
_RS01320
RR42_RS01325: RR42_RS01325 - hypothetical protein, at 300,706 to 301,023
_RS01325
RR42_RS01330: RR42_RS01330 - Fis family transcriptional regulator, at 301,044 to 302,765
_RS01330
Position (kb) 299
300
301 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 299.401 kb on - strand at 299.401 kb on - strand at 299.439 kb on + strand, within RR42_RS01315 at 299.440 kb on - strand, within RR42_RS01315 at 299.440 kb on - strand, within RR42_RS01315 at 300.037 kb on + strand, within RR42_RS01320 at 300.124 kb on + strand, within RR42_RS01320 at 300.124 kb on + strand, within RR42_RS01320 at 300.125 kb on - strand, within RR42_RS01320 at 300.193 kb on + strand, within RR42_RS01320 at 300.193 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.559 kb on + strand, within RR42_RS01320 at 300.560 kb on - strand, within RR42_RS01320 at 300.596 kb on - strand, within RR42_RS01320 at 300.859 kb on + strand, within RR42_RS01325 at 300.860 kb on - strand, within RR42_RS01325 at 300.890 kb on - strand, within RR42_RS01325 at 300.890 kb on - strand, within RR42_RS01325 at 300.916 kb on + strand, within RR42_RS01325 at 300.916 kb on + strand, within RR42_RS01325 at 300.917 kb on - strand, within RR42_RS01325 at 300.986 kb on - strand, within RR42_RS01325 at 301.075 kb on + strand at 301.075 kb on + strand at 301.075 kb on + strand at 301.576 kb on + strand, within RR42_RS01330 at 301.577 kb on - strand, within RR42_RS01330 at 301.691 kb on + strand, within RR42_RS01330 at 301.691 kb on + strand, within RR42_RS01330 at 301.692 kb on - strand, within RR42_RS01330 at 301.692 kb on - strand, within RR42_RS01330
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 299,401 - +0.1 299,401 - -1.3 299,439 + RR42_RS01315 0.14 +0.7 299,440 - RR42_RS01315 0.15 +0.8 299,440 - RR42_RS01315 0.15 -1.0 300,037 + RR42_RS01320 0.14 +1.1 300,124 + RR42_RS01320 0.25 +0.7 300,124 + RR42_RS01320 0.25 +0.6 300,125 - RR42_RS01320 0.25 -2.1 300,193 + RR42_RS01320 0.34 -1.7 300,193 + RR42_RS01320 0.34 -0.9 300,559 + RR42_RS01320 0.81 -3.9 300,559 + RR42_RS01320 0.81 -1.2 300,559 + RR42_RS01320 0.81 -1.7 300,559 + RR42_RS01320 0.81 -2.8 300,560 - RR42_RS01320 0.81 +2.9 300,596 - RR42_RS01320 0.86 -0.0 300,859 + RR42_RS01325 0.48 -3.8 300,860 - RR42_RS01325 0.48 +0.8 300,890 - RR42_RS01325 0.58 -1.6 300,890 - RR42_RS01325 0.58 +0.8 300,916 + RR42_RS01325 0.66 -0.1 300,916 + RR42_RS01325 0.66 +0.1 300,917 - RR42_RS01325 0.66 +0.9 300,986 - RR42_RS01325 0.88 +0.8 301,075 + -0.6 301,075 + +1.7 301,075 + +0.2 301,576 + RR42_RS01330 0.31 +1.2 301,577 - RR42_RS01330 0.31 -0.6 301,691 + RR42_RS01330 0.38 -1.4 301,691 + RR42_RS01330 0.38 -1.9 301,692 - RR42_RS01330 0.38 +0.0 301,692 - RR42_RS01330 0.38 -2.1
Or see this region's nucleotide sequence