Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01195 and RR42_RS01200 are separated by 64 nucleotides RR42_RS01200 and RR42_RS01205 are separated by 29 nucleotides RR42_RS01205 and RR42_RS01210 are separated by 145 nucleotides
RR42_RS01195: RR42_RS01195 - excinuclease ATPase, at 273,798 to 274,271
_RS01195
RR42_RS01200: RR42_RS01200 - hypothetical protein, at 274,336 to 275,145
_RS01200
RR42_RS01205: RR42_RS01205 - transposase, at 275,175 to 275,579
_RS01205
RR42_RS01210: RR42_RS01210 - n-acetyl-gamma-glutamyl-phosphate reductase, at 275,725 to 276,672
_RS01210
Position (kb) 275
276 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 274.200 kb on + strand, within RR42_RS01195 at 274.200 kb on + strand, within RR42_RS01195 at 274.201 kb on - strand, within RR42_RS01195 at 274.224 kb on + strand at 274.305 kb on - strand at 274.305 kb on - strand at 274.305 kb on - strand at 274.305 kb on - strand at 274.305 kb on - strand at 275.617 kb on + strand at 275.617 kb on + strand at 275.703 kb on - strand at 275.703 kb on - strand at 275.710 kb on - strand at 275.718 kb on - strand at 275.966 kb on + strand, within RR42_RS01210 at 275.966 kb on + strand, within RR42_RS01210 at 275.967 kb on - strand, within RR42_RS01210 at 276.230 kb on + strand, within RR42_RS01210 at 276.399 kb on - strand, within RR42_RS01210 at 276.450 kb on + strand, within RR42_RS01210 at 276.451 kb on - strand, within RR42_RS01210
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 274,200 + RR42_RS01195 0.85 -1.9 274,200 + RR42_RS01195 0.85 +0.4 274,201 - RR42_RS01195 0.85 +1.2 274,224 + -2.3 274,305 - -1.2 274,305 - -0.7 274,305 - -3.3 274,305 - +0.7 274,305 - -0.0 275,617 + +2.4 275,617 + -1.0 275,703 - -0.5 275,703 - -2.0 275,710 - -2.7 275,718 - -1.2 275,966 + RR42_RS01210 0.25 -3.8 275,966 + RR42_RS01210 0.25 +0.8 275,967 - RR42_RS01210 0.26 +0.9 276,230 + RR42_RS01210 0.53 +0.5 276,399 - RR42_RS01210 0.71 -2.3 276,450 + RR42_RS01210 0.76 -1.4 276,451 - RR42_RS01210 0.77 -0.5
Or see this region's nucleotide sequence