Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01030 and RR42_RS01035 overlap by 2 nucleotides RR42_RS01035 and RR42_RS01040 are separated by 282 nucleotides RR42_RS01040 and RR42_RS01045 are separated by 101 nucleotides RR42_RS01045 and RR42_RS01050 are separated by 147 nucleotides
RR42_RS01030: RR42_RS01030 - molecular chaperone DnaK, at 244,320 to 244,739
_RS01030
RR42_RS01035: RR42_RS01035 - hypothetical protein, at 244,738 to 245,046
_RS01035
RR42_RS01040: RR42_RS01040 - cobalamin biosynthesis protein CobW, at 245,329 to 246,417
_RS01040
RR42_RS01045: RR42_RS01045 - Fur family transcriptional regulator, at 246,519 to 247,040
_RS01045
RR42_RS01050: RR42_RS01050 - alpha/beta hydrolase, at 247,188 to 248,087
_RS01050
Position (kb) 245
246
247 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 245.187 kb on - strand at 245.187 kb on - strand at 245.212 kb on - strand at 245.212 kb on - strand at 245.212 kb on - strand at 245.216 kb on + strand at 245.216 kb on + strand at 245.216 kb on + strand at 245.217 kb on - strand at 245.217 kb on - strand at 245.240 kb on - strand at 245.240 kb on - strand at 245.270 kb on - strand at 245.270 kb on - strand at 245.496 kb on + strand, within RR42_RS01040 at 245.496 kb on + strand, within RR42_RS01040 at 245.496 kb on + strand, within RR42_RS01040 at 245.497 kb on - strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.498 kb on + strand, within RR42_RS01040 at 245.499 kb on - strand, within RR42_RS01040 at 245.499 kb on - strand, within RR42_RS01040 at 245.499 kb on - strand, within RR42_RS01040 at 245.499 kb on - strand, within RR42_RS01040 at 245.503 kb on + strand, within RR42_RS01040 at 245.503 kb on + strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.504 kb on - strand, within RR42_RS01040 at 245.513 kb on + strand, within RR42_RS01040 at 245.534 kb on + strand, within RR42_RS01040 at 245.534 kb on + strand, within RR42_RS01040 at 246.310 kb on + strand at 246.311 kb on - strand at 246.345 kb on + strand at 246.346 kb on - strand at 246.346 kb on - strand at 246.464 kb on + strand at 246.520 kb on + strand at 246.521 kb on - strand at 246.811 kb on + strand, within RR42_RS01045 at 246.812 kb on - strand, within RR42_RS01045 at 247.050 kb on + strand at 247.050 kb on + strand at 247.051 kb on - strand at 247.051 kb on - strand at 247.056 kb on + strand at 247.057 kb on - strand at 247.147 kb on + strand at 247.147 kb on + strand at 247.147 kb on + strand at 247.147 kb on + strand at 247.148 kb on - strand at 247.148 kb on - strand at 247.188 kb on - strand at 247.188 kb on - strand at 247.244 kb on + strand at 247.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 245,187 - +0.2 245,187 - +0.5 245,212 - -0.2 245,212 - +0.2 245,212 - -2.0 245,216 + -2.8 245,216 + -1.7 245,216 + -3.0 245,217 - -4.5 245,217 - +0.2 245,240 - +1.1 245,240 - +0.7 245,270 - -1.8 245,270 - -0.1 245,496 + RR42_RS01040 0.15 +2.8 245,496 + RR42_RS01040 0.15 -3.1 245,496 + RR42_RS01040 0.15 -3.0 245,497 - RR42_RS01040 0.15 -3.2 245,498 + RR42_RS01040 0.16 +0.4 245,498 + RR42_RS01040 0.16 -4.8 245,498 + RR42_RS01040 0.16 -2.9 245,498 + RR42_RS01040 0.16 +0.4 245,498 + RR42_RS01040 0.16 +1.8 245,498 + RR42_RS01040 0.16 +0.6 245,498 + RR42_RS01040 0.16 -0.0 245,498 + RR42_RS01040 0.16 +0.9 245,498 + RR42_RS01040 0.16 -1.7 245,498 + RR42_RS01040 0.16 +1.3 245,498 + RR42_RS01040 0.16 +1.8 245,498 + RR42_RS01040 0.16 +1.5 245,498 + RR42_RS01040 0.16 -1.8 245,498 + RR42_RS01040 0.16 -1.2 245,498 + RR42_RS01040 0.16 +0.7 245,499 - RR42_RS01040 0.16 +1.6 245,499 - RR42_RS01040 0.16 -2.5 245,499 - RR42_RS01040 0.16 -1.1 245,499 - RR42_RS01040 0.16 -0.8 245,503 + RR42_RS01040 0.16 -0.7 245,503 + RR42_RS01040 0.16 +1.1 245,504 - RR42_RS01040 0.16 -0.2 245,504 - RR42_RS01040 0.16 -0.4 245,504 - RR42_RS01040 0.16 +0.7 245,504 - RR42_RS01040 0.16 +1.5 245,504 - RR42_RS01040 0.16 +1.7 245,513 + RR42_RS01040 0.17 -0.2 245,534 + RR42_RS01040 0.19 -1.8 245,534 + RR42_RS01040 0.19 -0.6 246,310 + -2.4 246,311 - -0.8 246,345 + +0.4 246,346 - -0.4 246,346 - -1.2 246,464 + +0.9 246,520 + -1.8 246,521 - -2.7 246,811 + RR42_RS01045 0.56 +2.1 246,812 - RR42_RS01045 0.56 +0.2 247,050 + +2.3 247,050 + +1.7 247,051 - +0.7 247,051 - +1.5 247,056 + -0.4 247,057 - -1.5 247,147 + -1.4 247,147 + +0.4 247,147 + -0.5 247,147 + +1.7 247,148 - -0.4 247,148 - -2.7 247,188 - +0.1 247,188 - -0.4 247,244 + +0.6 247,245 - -0.4
Or see this region's nucleotide sequence