Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00915

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS00905 and RR42_RS00910 overlap by 4 nucleotidesRR42_RS00910 and RR42_RS00915 are separated by 8 nucleotidesRR42_RS00915 and RR42_RS00920 are separated by 62 nucleotides RR42_RS00905: RR42_RS00905 - haloacid dehalogenase, at 217,765 to 218,454 _RS00905 RR42_RS00910: RR42_RS00910 - hypothetical protein, at 218,451 to 218,876 _RS00910 RR42_RS00915: RR42_RS00915 - glutathione S-transferase, at 218,885 to 219,559 _RS00915 RR42_RS00920: RR42_RS00920 - dienelactone hydrolase, at 219,622 to 220,527 _RS00920 Position (kb) 218 219 220Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 217.899 kb on + strand, within RR42_RS00905at 217.900 kb on - strand, within RR42_RS00905at 218.202 kb on + strand, within RR42_RS00905at 218.203 kb on - strand, within RR42_RS00905at 218.203 kb on - strand, within RR42_RS00905at 218.251 kb on + strand, within RR42_RS00905at 218.251 kb on + strand, within RR42_RS00905at 218.251 kb on + strand, within RR42_RS00905at 218.252 kb on - strand, within RR42_RS00905at 218.310 kb on + strand, within RR42_RS00905at 218.425 kb on - strandat 218.592 kb on + strand, within RR42_RS00910at 218.592 kb on + strand, within RR42_RS00910at 218.592 kb on + strand, within RR42_RS00910at 218.639 kb on + strand, within RR42_RS00910at 218.639 kb on + strand, within RR42_RS00910at 218.639 kb on + strand, within RR42_RS00910at 218.640 kb on - strand, within RR42_RS00910at 218.640 kb on - strand, within RR42_RS00910at 218.752 kb on - strand, within RR42_RS00910at 218.800 kb on + strand, within RR42_RS00910at 218.801 kb on - strand, within RR42_RS00910at 218.841 kb on + strandat 218.912 kb on + strandat 218.912 kb on + strandat 218.921 kb on + strandat 218.921 kb on + strandat 218.922 kb on - strandat 218.922 kb on - strandat 218.922 kb on - strandat 218.948 kb on + strandat 218.948 kb on + strandat 218.949 kb on - strandat 218.949 kb on - strandat 218.949 kb on - strandat 219.161 kb on + strand, within RR42_RS00915at 219.162 kb on - strand, within RR42_RS00915at 219.162 kb on - strand, within RR42_RS00915at 219.162 kb on - strand, within RR42_RS00915at 219.162 kb on - strand, within RR42_RS00915at 219.236 kb on + strand, within RR42_RS00915at 219.236 kb on + strand, within RR42_RS00915at 219.248 kb on + strand, within RR42_RS00915at 219.249 kb on - strand, within RR42_RS00915at 219.419 kb on + strand, within RR42_RS00915at 219.516 kb on - strandat 219.950 kb on - strand, within RR42_RS00920at 220.072 kb on + strand, within RR42_RS00920at 220.072 kb on + strand, within RR42_RS00920at 220.072 kb on + strand, within RR42_RS00920at 220.072 kb on + strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.073 kb on - strand, within RR42_RS00920at 220.090 kb on + strand, within RR42_RS00920at 220.090 kb on + strand, within RR42_RS00920at 220.091 kb on - strand, within RR42_RS00920at 220.091 kb on - strand, within RR42_RS00920at 220.091 kb on - strand, within RR42_RS00920at 220.168 kb on + strand, within RR42_RS00920at 220.169 kb on - strand, within RR42_RS00920at 220.318 kb on + strand, within RR42_RS00920at 220.318 kb on + strand, within RR42_RS00920at 220.318 kb on + strand, within RR42_RS00920at 220.319 kb on - strand, within RR42_RS00920at 220.358 kb on - strand, within RR42_RS00920at 220.358 kb on - strand, within RR42_RS00920at 220.405 kb on + strand, within RR42_RS00920at 220.431 kb on + strand, within RR42_RS00920at 220.431 kb on + strand, within RR42_RS00920at 220.431 kb on + strand, within RR42_RS00920at 220.431 kb on + strand, within RR42_RS00920at 220.432 kb on - strand, within RR42_RS00920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
217,899 + RR42_RS00905 0.19 +1.2
217,900 - RR42_RS00905 0.20 +0.2
218,202 + RR42_RS00905 0.63 +0.1
218,203 - RR42_RS00905 0.63 +0.6
218,203 - RR42_RS00905 0.63 +0.6
218,251 + RR42_RS00905 0.70 +1.0
218,251 + RR42_RS00905 0.70 -0.5
218,251 + RR42_RS00905 0.70 +1.6
218,252 - RR42_RS00905 0.71 +4.9
218,310 + RR42_RS00905 0.79 -1.3
218,425 - -0.8
218,592 + RR42_RS00910 0.33 +0.7
218,592 + RR42_RS00910 0.33 -3.0
218,592 + RR42_RS00910 0.33 +2.4
218,639 + RR42_RS00910 0.44 +0.3
218,639 + RR42_RS00910 0.44 -0.6
218,639 + RR42_RS00910 0.44 +1.9
218,640 - RR42_RS00910 0.44 -2.9
218,640 - RR42_RS00910 0.44 -0.7
218,752 - RR42_RS00910 0.71 -4.2
218,800 + RR42_RS00910 0.82 -3.5
218,801 - RR42_RS00910 0.82 +2.4
218,841 + -2.1
218,912 + +2.0
218,912 + +0.9
218,921 + +2.0
218,921 + -0.4
218,922 - -0.8
218,922 - +1.3
218,922 - +1.3
218,948 + -0.1
218,948 + +0.0
218,949 - -2.7
218,949 - -1.3
218,949 - +3.4
219,161 + RR42_RS00915 0.41 -1.1
219,162 - RR42_RS00915 0.41 +0.2
219,162 - RR42_RS00915 0.41 -2.8
219,162 - RR42_RS00915 0.41 -1.5
219,162 - RR42_RS00915 0.41 -2.1
219,236 + RR42_RS00915 0.52 +1.1
219,236 + RR42_RS00915 0.52 -0.5
219,248 + RR42_RS00915 0.54 +0.2
219,249 - RR42_RS00915 0.54 +1.2
219,419 + RR42_RS00915 0.79 +1.9
219,516 - -0.4
219,950 - RR42_RS00920 0.36 +1.0
220,072 + RR42_RS00920 0.50 -1.4
220,072 + RR42_RS00920 0.50 -0.5
220,072 + RR42_RS00920 0.50 -1.4
220,072 + RR42_RS00920 0.50 -0.6
220,073 - RR42_RS00920 0.50 -4.1
220,073 - RR42_RS00920 0.50 -0.6
220,073 - RR42_RS00920 0.50 -2.7
220,073 - RR42_RS00920 0.50 +1.3
220,073 - RR42_RS00920 0.50 +2.7
220,090 + RR42_RS00920 0.52 -1.3
220,090 + RR42_RS00920 0.52 +0.6
220,091 - RR42_RS00920 0.52 -0.0
220,091 - RR42_RS00920 0.52 -2.2
220,091 - RR42_RS00920 0.52 -4.6
220,168 + RR42_RS00920 0.60 -1.6
220,169 - RR42_RS00920 0.60 -2.1
220,318 + RR42_RS00920 0.77 -0.3
220,318 + RR42_RS00920 0.77 -0.6
220,318 + RR42_RS00920 0.77 -0.4
220,319 - RR42_RS00920 0.77 -1.6
220,358 - RR42_RS00920 0.81 +0.4
220,358 - RR42_RS00920 0.81 +0.4
220,405 + RR42_RS00920 0.86 -2.3
220,431 + RR42_RS00920 0.89 +0.5
220,431 + RR42_RS00920 0.89 -2.2
220,431 + RR42_RS00920 0.89 -2.3
220,431 + RR42_RS00920 0.89 -0.2
220,432 - RR42_RS00920 0.89 -3.2

Or see this region's nucleotide sequence