Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00815 and RR42_RS00820 are separated by 313 nucleotides RR42_RS00820 and RR42_RS00825 are separated by 260 nucleotides RR42_RS00825 and RR42_RS00830 are separated by 128 nucleotides RR42_RS00830 and RR42_RS00835 are separated by 91 nucleotides
RR42_RS00815: RR42_RS00815 - hypothetical protein, at 200,180 to 200,596
_RS00815
RR42_RS00820: RR42_RS00820 - hypothetical protein, at 200,910 to 201,233
_RS00820
RR42_RS00825: RR42_RS00825 - arginyl-tRNA synthetase, at 201,494 to 203,287
_RS00825
RR42_RS00830: RR42_RS00830 - cell division protein FtsN, at 203,416 to 204,192
_RS00830
RR42_RS00835: RR42_RS00835 - DSBA oxidoreductase, at 204,284 to 204,922
_RS00835
Position (kb) 201
202
203
204 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 200.527 kb on + strand, within RR42_RS00815 at 200.527 kb on + strand, within RR42_RS00815 at 200.527 kb on + strand, within RR42_RS00815 at 200.648 kb on + strand at 200.672 kb on - strand at 200.839 kb on - strand at 200.865 kb on + strand at 200.876 kb on + strand at 200.881 kb on + strand at 200.881 kb on + strand at 200.881 kb on + strand at 200.882 kb on - strand at 200.889 kb on + strand at 200.911 kb on + strand at 200.912 kb on - strand at 200.912 kb on - strand at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.093 kb on - strand, within RR42_RS00820 at 201.237 kb on - strand at 201.237 kb on - strand at 201.237 kb on - strand at 201.237 kb on - strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.265 kb on - strand at 201.265 kb on - strand at 201.265 kb on - strand at 201.367 kb on + strand at 203.285 kb on + strand at 203.285 kb on + strand at 203.285 kb on + strand at 203.285 kb on + strand at 203.286 kb on - strand at 203.286 kb on - strand at 203.286 kb on - strand at 203.286 kb on - strand at 203.335 kb on + strand at 203.335 kb on + strand at 203.341 kb on + strand at 203.386 kb on + strand at 203.387 kb on - strand at 203.388 kb on + strand at 203.476 kb on - strand at 203.539 kb on + strand, within RR42_RS00830 at 203.539 kb on + strand, within RR42_RS00830 at 203.539 kb on + strand, within RR42_RS00830 at 203.539 kb on + strand, within RR42_RS00830 at 203.540 kb on - strand, within RR42_RS00830 at 203.542 kb on - strand, within RR42_RS00830 at 203.542 kb on - strand, within RR42_RS00830 at 203.542 kb on - strand, within RR42_RS00830 at 203.957 kb on + strand, within RR42_RS00830 at 203.957 kb on + strand, within RR42_RS00830 at 203.957 kb on + strand, within RR42_RS00830 at 203.958 kb on - strand, within RR42_RS00830 at 203.958 kb on - strand, within RR42_RS00830 at 203.963 kb on - strand, within RR42_RS00830 at 204.082 kb on + strand, within RR42_RS00830 at 204.083 kb on - strand, within RR42_RS00830 at 204.180 kb on + strand at 204.181 kb on - strand at 204.191 kb on - strand at 204.191 kb on - strand at 204.200 kb on + strand at 204.250 kb on + strand at 204.250 kb on + strand at 204.251 kb on - strand at 204.251 kb on - strand at 204.251 kb on - strand at 204.251 kb on - strand at 204.251 kb on - strand at 204.251 kb on - strand at 204.251 kb on - strand at 204.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 200,527 + RR42_RS00815 0.83 -2.7 200,527 + RR42_RS00815 0.83 -0.5 200,527 + RR42_RS00815 0.83 +1.1 200,648 + -1.0 200,672 - +0.3 200,839 - +0.0 200,865 + -1.5 200,876 + +0.9 200,881 + +0.6 200,881 + -2.2 200,881 + +1.7 200,882 - -0.3 200,889 + -0.1 200,911 + -4.1 200,912 - +1.6 200,912 - -0.1 201,090 + RR42_RS00820 0.56 +1.7 201,090 + RR42_RS00820 0.56 -2.0 201,090 + RR42_RS00820 0.56 -3.9 201,090 + RR42_RS00820 0.56 -0.2 201,090 + RR42_RS00820 0.56 -2.7 201,090 + RR42_RS00820 0.56 -0.3 201,091 - RR42_RS00820 0.56 -0.3 201,091 - RR42_RS00820 0.56 -1.0 201,091 - RR42_RS00820 0.56 -1.9 201,091 - RR42_RS00820 0.56 -2.1 201,091 - RR42_RS00820 0.56 +1.4 201,093 - RR42_RS00820 0.56 -0.6 201,237 - +0.9 201,237 - +2.5 201,237 - -1.0 201,237 - -2.3 201,264 + +0.0 201,264 + -2.1 201,264 + -2.5 201,264 + -0.7 201,264 + +1.0 201,264 + +1.1 201,265 - +1.9 201,265 - -1.0 201,265 - +1.1 201,367 + -2.3 203,285 + -1.1 203,285 + +0.6 203,285 + +0.4 203,285 + +1.2 203,286 - +1.4 203,286 - +0.4 203,286 - +0.0 203,286 - -2.4 203,335 + -1.1 203,335 + +0.3 203,341 + -2.6 203,386 + +0.8 203,387 - +1.4 203,388 + -3.0 203,476 - -1.1 203,539 + RR42_RS00830 0.16 +0.4 203,539 + RR42_RS00830 0.16 +1.0 203,539 + RR42_RS00830 0.16 +3.7 203,539 + RR42_RS00830 0.16 -0.1 203,540 - RR42_RS00830 0.16 -1.6 203,542 - RR42_RS00830 0.16 +0.1 203,542 - RR42_RS00830 0.16 -4.0 203,542 - RR42_RS00830 0.16 -2.2 203,957 + RR42_RS00830 0.70 -1.2 203,957 + RR42_RS00830 0.70 +0.2 203,957 + RR42_RS00830 0.70 -3.9 203,958 - RR42_RS00830 0.70 +1.1 203,958 - RR42_RS00830 0.70 -2.6 203,963 - RR42_RS00830 0.70 -1.5 204,082 + RR42_RS00830 0.86 -0.6 204,083 - RR42_RS00830 0.86 -1.5 204,180 + +0.8 204,181 - +0.7 204,191 - -1.1 204,191 - -1.7 204,200 + +1.4 204,250 + +1.2 204,250 + +2.7 204,251 - +0.6 204,251 - +0.7 204,251 - +0.8 204,251 - -2.8 204,251 - +0.1 204,251 - +1.9 204,251 - +1.7 204,251 - +0.7
Or see this region's nucleotide sequence