Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00750

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS00745 and RR42_RS00750 are separated by 58 nucleotidesRR42_RS00750 and RR42_RS00755 are separated by 123 nucleotides RR42_RS00745: RR42_RS00745 - IclR family transcriptional regulator, at 187,547 to 188,383 _RS00745 RR42_RS00750: RR42_RS00750 - hypothetical protein, at 188,442 to 189,422 _RS00750 RR42_RS00755: RR42_RS00755 - 3-oxoadipate enol-lactonase, at 189,546 to 190,388 _RS00755 Position (kb) 188 189 190Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 187.444 kb on + strandat 187.445 kb on - strandat 187.445 kb on - strandat 187.446 kb on + strandat 187.450 kb on - strandat 187.450 kb on - strandat 187.498 kb on - strandat 187.498 kb on - strandat 187.507 kb on + strandat 187.507 kb on + strandat 187.508 kb on - strandat 187.508 kb on - strandat 187.706 kb on + strand, within RR42_RS00745at 187.764 kb on - strand, within RR42_RS00745at 188.015 kb on + strand, within RR42_RS00745at 188.016 kb on - strand, within RR42_RS00745at 188.016 kb on - strand, within RR42_RS00745at 188.081 kb on - strand, within RR42_RS00745at 188.081 kb on - strand, within RR42_RS00745at 188.081 kb on - strand, within RR42_RS00745at 188.081 kb on - strand, within RR42_RS00745at 188.111 kb on + strandat 188.111 kb on + strand, within RR42_RS00745at 188.112 kb on - strand, within RR42_RS00745at 188.112 kb on - strand, within RR42_RS00745at 188.259 kb on + strand, within RR42_RS00745at 188.259 kb on + strand, within RR42_RS00745at 188.260 kb on - strand, within RR42_RS00745at 188.336 kb on + strandat 188.336 kb on + strandat 188.468 kb on + strandat 188.468 kb on + strandat 188.469 kb on - strandat 188.469 kb on - strandat 188.883 kb on + strand, within RR42_RS00750at 189.145 kb on - strand, within RR42_RS00750at 189.145 kb on - strand, within RR42_RS00750at 189.216 kb on + strand, within RR42_RS00750at 189.216 kb on + strand, within RR42_RS00750at 189.216 kb on + strand, within RR42_RS00750at 189.216 kb on + strand, within RR42_RS00750at 189.216 kb on + strand, within RR42_RS00750at 189.216 kb on + strand, within RR42_RS00750at 189.216 kb on + strand, within RR42_RS00750at 189.216 kb on + strand, within RR42_RS00750at 189.216 kb on + strand, within RR42_RS00750at 189.217 kb on - strand, within RR42_RS00750at 189.217 kb on - strand, within RR42_RS00750at 189.217 kb on - strand, within RR42_RS00750at 189.239 kb on + strand, within RR42_RS00750at 189.450 kb on - strandat 189.727 kb on - strand, within RR42_RS00755at 189.772 kb on - strand, within RR42_RS00755at 189.772 kb on - strand, within RR42_RS00755at 190.184 kb on + strand, within RR42_RS00755at 190.184 kb on + strand, within RR42_RS00755at 190.305 kb on - strandat 190.381 kb on + strandat 190.381 kb on + strandat 190.381 kb on + strandat 190.381 kb on + strandat 190.382 kb on - strandat 190.382 kb on - strandat 190.382 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
187,444 + +3.0
187,445 - +0.7
187,445 - +1.5
187,446 + +0.9
187,450 - +0.3
187,450 - +2.2
187,498 - -2.2
187,498 - -2.0
187,507 + +1.2
187,507 + +2.2
187,508 - -1.1
187,508 - -3.9
187,706 + RR42_RS00745 0.19 -4.1
187,764 - RR42_RS00745 0.26 -2.0
188,015 + RR42_RS00745 0.56 -2.3
188,016 - RR42_RS00745 0.56 +1.2
188,016 - RR42_RS00745 0.56 -2.2
188,081 - RR42_RS00745 0.64 -1.6
188,081 - RR42_RS00745 0.64 -3.3
188,081 - RR42_RS00745 0.64 -0.3
188,081 - RR42_RS00745 0.64 -0.2
188,111 + +2.2
188,111 + RR42_RS00745 0.67 -2.5
188,112 - RR42_RS00745 0.68 +1.4
188,112 - RR42_RS00745 0.68 +1.0
188,259 + RR42_RS00745 0.85 -1.9
188,259 + RR42_RS00745 0.85 -2.2
188,260 - RR42_RS00745 0.85 +1.0
188,336 + +0.4
188,336 + +1.8
188,468 + +0.6
188,468 + -2.5
188,469 - -2.8
188,469 - -1.1
188,883 + RR42_RS00750 0.45 +0.4
189,145 - RR42_RS00750 0.72 +1.5
189,145 - RR42_RS00750 0.72 +1.6
189,216 + RR42_RS00750 0.79 -0.6
189,216 + RR42_RS00750 0.79 +1.8
189,216 + RR42_RS00750 0.79 +0.8
189,216 + RR42_RS00750 0.79 +1.6
189,216 + RR42_RS00750 0.79 -2.4
189,216 + RR42_RS00750 0.79 -3.4
189,216 + RR42_RS00750 0.79 +0.2
189,216 + RR42_RS00750 0.79 +1.5
189,216 + RR42_RS00750 0.79 -2.4
189,217 - RR42_RS00750 0.79 -1.8
189,217 - RR42_RS00750 0.79 +0.7
189,217 - RR42_RS00750 0.79 -0.1
189,239 + RR42_RS00750 0.81 -1.1
189,450 - +1.0
189,727 - RR42_RS00755 0.21 +2.3
189,772 - RR42_RS00755 0.27 +0.4
189,772 - RR42_RS00755 0.27 +1.4
190,184 + RR42_RS00755 0.76 +0.5
190,184 + RR42_RS00755 0.76 -0.1
190,305 - -0.3
190,381 + +2.2
190,381 + -2.0
190,381 + +0.4
190,381 + +0.5
190,382 - +2.1
190,382 - -0.9
190,382 - -3.4

Or see this region's nucleotide sequence