Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00695 and RR42_RS00700 overlap by 4 nucleotides RR42_RS00700 and RR42_RS00705 are separated by 57 nucleotides RR42_RS00705 and RR42_RS00710 are separated by 28 nucleotides
RR42_RS00695: RR42_RS00695 - biotin--[acetyl-CoA-carboxylase] synthetase, at 176,821 to 177,705
_RS00695
RR42_RS00700: RR42_RS00700 - pantothenate kinase, at 177,702 to 178,544
_RS00700
RR42_RS00705: RR42_RS00705 - hypothetical protein, at 178,602 to 179,330
_RS00705
RR42_RS00710: RR42_RS00710 - ADP-heptose synthase, at 179,359 to 179,847
_RS00710
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 176.754 kb on + strand at 176.755 kb on - strand at 176.755 kb on - strand at 176.763 kb on + strand at 176.763 kb on + strand at 178.567 kb on + strand at 178.567 kb on + strand at 178.568 kb on - strand at 178.621 kb on + strand at 179.069 kb on + strand, within RR42_RS00705 at 179.070 kb on - strand, within RR42_RS00705 at 179.080 kb on + strand, within RR42_RS00705 at 179.080 kb on + strand, within RR42_RS00705 at 179.080 kb on + strand, within RR42_RS00705 at 179.080 kb on + strand, within RR42_RS00705 at 179.081 kb on - strand, within RR42_RS00705 at 179.081 kb on - strand, within RR42_RS00705 at 179.081 kb on - strand, within RR42_RS00705 at 179.112 kb on + strand, within RR42_RS00705 at 179.112 kb on + strand, within RR42_RS00705 at 179.113 kb on - strand, within RR42_RS00705 at 179.113 kb on - strand, within RR42_RS00705 at 179.113 kb on - strand, within RR42_RS00705 at 179.113 kb on - strand, within RR42_RS00705 at 179.113 kb on - strand, within RR42_RS00705 at 179.114 kb on + strand, within RR42_RS00705 at 179.115 kb on - strand, within RR42_RS00705 at 179.115 kb on - strand, within RR42_RS00705
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 176,754 + +0.1 176,755 - -0.4 176,755 - +0.4 176,763 + -0.4 176,763 + -3.2 178,567 + +0.2 178,567 + -1.9 178,568 - -3.7 178,621 + -0.5 179,069 + RR42_RS00705 0.64 +1.9 179,070 - RR42_RS00705 0.64 +2.5 179,080 + RR42_RS00705 0.66 +0.6 179,080 + RR42_RS00705 0.66 +0.7 179,080 + RR42_RS00705 0.66 +1.3 179,080 + RR42_RS00705 0.66 +1.8 179,081 - RR42_RS00705 0.66 -0.6 179,081 - RR42_RS00705 0.66 -2.7 179,081 - RR42_RS00705 0.66 +0.2 179,112 + RR42_RS00705 0.70 -2.9 179,112 + RR42_RS00705 0.70 +1.3 179,113 - RR42_RS00705 0.70 -0.4 179,113 - RR42_RS00705 0.70 -1.9 179,113 - RR42_RS00705 0.70 -1.3 179,113 - RR42_RS00705 0.70 -2.1 179,113 - RR42_RS00705 0.70 -1.6 179,114 + RR42_RS00705 0.70 +1.7 179,115 - RR42_RS00705 0.70 -1.0 179,115 - RR42_RS00705 0.70 +1.1
Or see this region's nucleotide sequence