Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00690 and RR42_RS00695 are separated by 159 nucleotides RR42_RS00695 and RR42_RS00700 overlap by 4 nucleotides RR42_RS00700 and RR42_RS00705 are separated by 57 nucleotides
RR42_RS00690: RR42_RS00690 - ABC transporter permease, at 175,540 to 176,661
_RS00690
RR42_RS00695: RR42_RS00695 - biotin--[acetyl-CoA-carboxylase] synthetase, at 176,821 to 177,705
_RS00695
RR42_RS00700: RR42_RS00700 - pantothenate kinase, at 177,702 to 178,544
_RS00700
RR42_RS00705: RR42_RS00705 - hypothetical protein, at 178,602 to 179,330
_RS00705
Position (kb) 176
177
178 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 176.111 kb on + strand, within RR42_RS00690 at 176.169 kb on - strand, within RR42_RS00690 at 176.180 kb on + strand, within RR42_RS00690 at 176.181 kb on - strand, within RR42_RS00690 at 176.181 kb on - strand at 176.184 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.346 kb on + strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.347 kb on - strand, within RR42_RS00690 at 176.635 kb on + strand at 176.635 kb on + strand at 176.636 kb on - strand at 176.636 kb on - strand at 176.697 kb on - strand at 176.697 kb on - strand at 176.754 kb on + strand at 176.755 kb on - strand at 176.755 kb on - strand at 176.763 kb on + strand at 176.763 kb on + strand at 178.567 kb on + strand at 178.567 kb on + strand at 178.568 kb on - strand at 178.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 176,111 + RR42_RS00690 0.51 -2.1 176,169 - RR42_RS00690 0.56 -4.2 176,180 + RR42_RS00690 0.57 -0.4 176,181 - RR42_RS00690 0.57 +1.0 176,181 - +0.2 176,184 + RR42_RS00690 0.57 +0.3 176,346 + RR42_RS00690 0.72 +0.6 176,346 + RR42_RS00690 0.72 -2.8 176,346 + RR42_RS00690 0.72 -2.2 176,346 + RR42_RS00690 0.72 +2.4 176,346 + RR42_RS00690 0.72 -0.9 176,346 + RR42_RS00690 0.72 -2.1 176,346 + RR42_RS00690 0.72 +0.6 176,346 + RR42_RS00690 0.72 -0.5 176,346 + RR42_RS00690 0.72 -2.3 176,346 + RR42_RS00690 0.72 +1.8 176,346 + RR42_RS00690 0.72 -2.6 176,346 + RR42_RS00690 0.72 -0.5 176,347 - RR42_RS00690 0.72 -1.1 176,347 - RR42_RS00690 0.72 -2.9 176,347 - RR42_RS00690 0.72 +1.1 176,347 - RR42_RS00690 0.72 -2.1 176,347 - RR42_RS00690 0.72 +1.4 176,347 - RR42_RS00690 0.72 +1.9 176,347 - RR42_RS00690 0.72 +0.5 176,347 - RR42_RS00690 0.72 +1.5 176,347 - RR42_RS00690 0.72 -0.5 176,347 - RR42_RS00690 0.72 -2.7 176,347 - RR42_RS00690 0.72 -1.9 176,347 - RR42_RS00690 0.72 +0.0 176,635 + +1.7 176,635 + -1.3 176,636 - -1.5 176,636 - +2.9 176,697 - +0.4 176,697 - -3.7 176,754 + +0.1 176,755 - -0.4 176,755 - +0.4 176,763 + -0.4 176,763 + -3.2 178,567 + +0.2 178,567 + -1.9 178,568 - -3.7 178,621 + -0.5
Or see this region's nucleotide sequence