Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00540

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
142,026	-		RR42_RS00535	0.75	+1.5
142,219	-		RR42_RS00535	0.80	+1.5
142,486	-		RR42_RS00535	0.88	-1.7
142,624	-				+0.4
142,734	+				+2.6
142,735	-				-0.6
142,735	-				-1.3
142,760	+				+0.7
142,760	+				-1.7
142,761	-				-3.2
142,764	+				-0.8
142,764	+				+0.7
142,764	+				+0.6
142,764	+				-0.8
142,764	+				+1.2
142,764	+				-2.4
142,764	+				-2.6
142,765	-				+0.9
142,765	-				-1.0
142,788	+				+2.0
143,091	+				-1.1
143,092	-				-1.7
143,171	+				+0.3
143,171	+				-1.1
143,172	-				+2.2
143,172	-				+1.0
143,172	-				-0.6
143,324	+		RR42_RS00540	0.14	+1.4
143,324	+		RR42_RS00540	0.14	-1.1
143,324	+		RR42_RS00540	0.14	+1.7
143,325	-		RR42_RS00540	0.15	+0.1
143,325	-		RR42_RS00540	0.15	-1.6
143,412	-		RR42_RS00540	0.18	+0.2
143,412	-		RR42_RS00540	0.18	+2.6
143,464	+		RR42_RS00540	0.20	-1.5
143,464	+		RR42_RS00540	0.20	-0.4
143,465	-		RR42_RS00540	0.20	-1.1
143,465	-		RR42_RS00540	0.20	-0.5
143,465	-		RR42_RS00540	0.20	-0.5
143,525	+		RR42_RS00540	0.22	+1.6
143,729	+		RR42_RS00540	0.30	-0.1
143,730	-		RR42_RS00540	0.30	-1.1
143,732	-		RR42_RS00540	0.30	-1.9
143,741	+		RR42_RS00540	0.30	+2.5
143,742	-		RR42_RS00540	0.30	+0.2
143,825	+		RR42_RS00540	0.33	+0.4
143,825	+		RR42_RS00540	0.33	-2.5
143,826	-		RR42_RS00540	0.33	-0.2
143,826	-		RR42_RS00540	0.33	+1.2
143,889	-		RR42_RS00540	0.36	+2.3
143,889	-		RR42_RS00540	0.36	+0.7
144,158	+		RR42_RS00540	0.46	+0.1
144,323	-		RR42_RS00540	0.52	+0.7
144,353	+		RR42_RS00540	0.53	-0.9
144,353	+		RR42_RS00540	0.53	+2.2
144,353	+		RR42_RS00540	0.53	+1.2
144,354	-		RR42_RS00540	0.53	-1.2
144,633	+		RR42_RS00540	0.64	+0.9
144,633	+		RR42_RS00540	0.64	+0.8
144,634	-		RR42_RS00540	0.64	+1.2
144,634	-		RR42_RS00540	0.64	+1.4
144,852	+		RR42_RS00540	0.72	-3.9
144,853	-		RR42_RS00540	0.72	+0.3
144,989	+		RR42_RS00540	0.77	+2.1
144,990	-		RR42_RS00540	0.77	-1.7
144,990	-		RR42_RS00540	0.77	+2.8
144,990	-		RR42_RS00540	0.77	+0.9
144,990	-		RR42_RS00540	0.77	+0.9
144,990	-		RR42_RS00540	0.77	-1.8
145,469	+				+1.0
145,469	+				-3.3
145,469	+				-0.3
145,488	+				+0.2
145,705	+				-0.7
145,705	+				-0.8
145,705	+				+0.8
145,706	-				+0.7
145,706	-				+0.9
145,706	-				+0.7
145,711	+				+0.5
145,712	-				+0.5
145,862	-		RR42_RS00545	0.21	-1.9
145,862	-		RR42_RS00545	0.21	-3.9
145,888	+		RR42_RS00545	0.24	-2.9
145,888	+		RR42_RS00545	0.24	+1.7
145,889	-		RR42_RS00545	0.24	-0.9
146,162	-		RR42_RS00545	0.55	-1.1
146,288	-		RR42_RS00545	0.70	-1.7
146,465	-		RR42_RS00545	0.90	+0.3
146,466	+				-1.8
146,467	-				+0.8
146,551	+				+0.4
146,552	-				-1.3