Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00375 and RR42_RS00380 are separated by 163 nucleotides RR42_RS00380 and RR42_RS00385 overlap by 4 nucleotides RR42_RS00385 and RR42_RS00390 are separated by 457 nucleotides
RR42_RS00375: RR42_RS00375 - MFS transporter, at 101,070 to 102,368
_RS00375
RR42_RS00380: RR42_RS00380 - GntR family transcriptional regulator, at 102,532 to 103,278
_RS00380
RR42_RS00385: RR42_RS00385 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 103,275 to 104,117
_RS00385
RR42_RS00390: RR42_RS00390 - amidohydrolase, at 104,575 to 105,843
_RS00390
Position (kb) 103
104
105 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 102.574 kb on - strand at 102.574 kb on - strand at 102.772 kb on + strand, within RR42_RS00380 at 102.773 kb on - strand, within RR42_RS00380 at 102.958 kb on + strand, within RR42_RS00380 at 102.958 kb on + strand, within RR42_RS00380 at 102.959 kb on - strand, within RR42_RS00380 at 102.959 kb on - strand, within RR42_RS00380 at 102.959 kb on - strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.030 kb on + strand, within RR42_RS00380 at 103.031 kb on - strand, within RR42_RS00380 at 103.031 kb on - strand, within RR42_RS00380 at 103.031 kb on - strand, within RR42_RS00380 at 103.084 kb on - strand, within RR42_RS00380 at 103.282 kb on + strand at 103.282 kb on + strand at 103.282 kb on + strand at 103.283 kb on - strand at 103.283 kb on - strand at 103.283 kb on - strand at 103.285 kb on + strand at 103.285 kb on + strand at 103.286 kb on - strand at 103.286 kb on - strand at 103.286 kb on - strand at 103.286 kb on - strand at 103.295 kb on + strand at 103.510 kb on - strand, within RR42_RS00385 at 103.510 kb on - strand, within RR42_RS00385 at 103.947 kb on + strand, within RR42_RS00385 at 104.109 kb on + strand at 104.115 kb on + strand at 104.115 kb on + strand at 104.116 kb on - strand at 104.199 kb on + strand at 104.199 kb on + strand at 104.203 kb on + strand at 104.251 kb on + strand at 104.351 kb on + strand at 104.376 kb on - strand at 104.476 kb on - strand at 104.486 kb on - strand at 104.517 kb on + strand at 104.536 kb on + strand at 104.546 kb on - strand at 104.568 kb on + strand at 104.815 kb on + strand, within RR42_RS00390 at 104.945 kb on - strand, within RR42_RS00390
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 102,574 - -3.2 102,574 - -3.7 102,772 + RR42_RS00380 0.32 +1.1 102,773 - RR42_RS00380 0.32 -3.1 102,958 + RR42_RS00380 0.57 -0.6 102,958 + RR42_RS00380 0.57 -0.1 102,959 - RR42_RS00380 0.57 -3.4 102,959 - RR42_RS00380 0.57 -3.3 102,959 - RR42_RS00380 0.57 -4.6 103,030 + RR42_RS00380 0.67 -5.0 103,030 + RR42_RS00380 0.67 -0.9 103,030 + RR42_RS00380 0.67 -1.5 103,030 + RR42_RS00380 0.67 +1.6 103,030 + RR42_RS00380 0.67 -1.0 103,030 + RR42_RS00380 0.67 -1.7 103,031 - RR42_RS00380 0.67 -1.3 103,031 - RR42_RS00380 0.67 +0.7 103,031 - RR42_RS00380 0.67 -2.5 103,084 - RR42_RS00380 0.74 -3.1 103,282 + +1.1 103,282 + +0.9 103,282 + +1.8 103,283 - +0.3 103,283 - +0.3 103,283 - +0.3 103,285 + +2.1 103,285 + -2.0 103,286 - -2.8 103,286 - +1.5 103,286 - +1.1 103,286 - -3.6 103,295 + -1.9 103,510 - RR42_RS00385 0.28 +0.9 103,510 - RR42_RS00385 0.28 +0.9 103,947 + RR42_RS00385 0.80 -0.5 104,109 + -2.7 104,115 + -1.1 104,115 + +0.8 104,116 - +0.1 104,199 + -0.2 104,199 + -2.1 104,203 + -0.5 104,251 + +0.1 104,351 + +0.9 104,376 - +1.1 104,476 - -3.3 104,486 - +0.4 104,517 + +2.4 104,536 + +1.1 104,546 - -2.0 104,568 + -2.0 104,815 + RR42_RS00390 0.19 -3.2 104,945 - RR42_RS00390 0.29 +0.9
Or see this region's nucleotide sequence