Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00350 and RR42_RS00355 are separated by 141 nucleotides RR42_RS00355 and RR42_RS00360 are separated by 90 nucleotides
RR42_RS00350: RR42_RS00350 - LysR family transcriptional regulator, at 95,735 to 96,637
_RS00350
RR42_RS00355: RR42_RS00355 - hypothetical protein, at 96,779 to 97,741
_RS00355
RR42_RS00360: RR42_RS00360 - Asp/Glu/hydantoin racemase, at 97,832 to 98,569
_RS00360
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 95.790 kb on + strand at 95.908 kb on + strand, within RR42_RS00350 at 95.908 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.911 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.666 kb on + strand at 96.667 kb on - strand at 96.814 kb on - strand at 97.019 kb on + strand, within RR42_RS00355 at 97.020 kb on - strand, within RR42_RS00355 at 97.101 kb on - strand, within RR42_RS00355 at 97.115 kb on + strand, within RR42_RS00355 at 97.191 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.377 kb on - strand, within RR42_RS00355 at 97.465 kb on + strand, within RR42_RS00355 at 97.611 kb on - strand, within RR42_RS00355 at 97.834 kb on - strand at 97.834 kb on - strand at 98.440 kb on + strand, within RR42_RS00360 at 98.443 kb on - strand, within RR42_RS00360 at 98.543 kb on - strand at 98.551 kb on + strand at 98.551 kb on + strand at 98.551 kb on + strand at 98.552 kb on - strand at 98.563 kb on + strand at 98.647 kb on - strand at 98.657 kb on - strand at 98.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 95,790 + -0.0 95,908 + RR42_RS00350 0.19 -0.2 95,908 + RR42_RS00350 0.19 -0.5 95,910 + RR42_RS00350 0.19 +0.0 95,910 + RR42_RS00350 0.19 +0.8 95,910 + RR42_RS00350 0.19 +1.4 95,910 + RR42_RS00350 0.19 -0.3 95,910 + RR42_RS00350 0.19 -0.6 95,911 - RR42_RS00350 0.19 -3.1 96,118 - RR42_RS00350 0.42 +0.1 96,118 - RR42_RS00350 0.42 +1.6 96,136 + RR42_RS00350 0.44 +0.2 96,136 + RR42_RS00350 0.44 -1.6 96,136 + RR42_RS00350 0.44 -1.3 96,137 - RR42_RS00350 0.45 -0.8 96,137 - RR42_RS00350 0.45 -0.8 96,140 + RR42_RS00350 0.45 +2.9 96,140 + RR42_RS00350 0.45 -0.5 96,666 + -0.8 96,667 - -2.0 96,814 - +0.6 97,019 + RR42_RS00355 0.25 +2.5 97,020 - RR42_RS00355 0.25 -1.8 97,101 - RR42_RS00355 0.33 -0.2 97,115 + RR42_RS00355 0.35 +0.6 97,191 + RR42_RS00355 0.43 +1.0 97,340 + RR42_RS00355 0.58 -0.2 97,340 + RR42_RS00355 0.58 +1.2 97,340 + RR42_RS00355 0.58 -2.6 97,341 - RR42_RS00355 0.58 -1.2 97,341 - RR42_RS00355 0.58 -3.4 97,341 - RR42_RS00355 0.58 +1.6 97,377 - RR42_RS00355 0.62 +0.8 97,465 + RR42_RS00355 0.71 +0.7 97,611 - RR42_RS00355 0.86 +1.7 97,834 - +0.4 97,834 - +1.6 98,440 + RR42_RS00360 0.82 -1.9 98,443 - RR42_RS00360 0.83 +0.3 98,543 - -0.6 98,551 + +1.4 98,551 + -1.5 98,551 + +1.9 98,552 - -1.2 98,563 + +0.2 98,647 - +1.5 98,657 - -0.2 98,702 - -1.9
Or see this region's nucleotide sequence