Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00265 and RR42_RS00270 are separated by 57 nucleotides RR42_RS00270 and RR42_RS00275 are separated by 59 nucleotides RR42_RS00275 and RR42_RS00280 are separated by 81 nucleotides RR42_RS00280 and RR42_RS00285 are separated by 269 nucleotides
RR42_RS00265: RR42_RS00265 - phosphate ABC transporter ATP-binding protein, at 78,893 to 79,621
_RS00265
RR42_RS00270: RR42_RS00270 - amino acid ABC transporter, at 79,679 to 80,485
_RS00270
RR42_RS00275: RR42_RS00275 - galactarate dehydratase, at 80,545 to 82,113
_RS00275
RR42_RS00280: RR42_RS00280 - glutathione peroxidase, at 82,195 to 82,746
_RS00280
RR42_RS00285: RR42_RS00285 - thiamine biosynthesis protein ThiS, at 83,016 to 83,285
_RS00285
Position (kb) 80
81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 79.661 kb on - strand at 79.682 kb on + strand at 79.682 kb on + strand at 79.682 kb on + strand at 79.683 kb on - strand at 79.683 kb on - strand at 79.683 kb on - strand at 79.687 kb on + strand at 79.687 kb on + strand at 79.688 kb on - strand at 80.199 kb on - strand, within RR42_RS00270 at 80.337 kb on - strand, within RR42_RS00270 at 80.342 kb on + strand, within RR42_RS00270 at 80.342 kb on + strand, within RR42_RS00270 at 80.343 kb on - strand, within RR42_RS00270 at 80.439 kb on - strand at 80.439 kb on - strand at 80.439 kb on - strand at 80.447 kb on + strand at 80.447 kb on + strand at 80.448 kb on - strand at 80.483 kb on + strand at 80.483 kb on + strand at 80.483 kb on + strand at 80.483 kb on + strand at 80.484 kb on - strand at 80.484 kb on - strand at 80.484 kb on - strand at 80.484 kb on - strand at 80.589 kb on + strand at 80.590 kb on - strand at 80.590 kb on - strand at 80.590 kb on - strand at 80.851 kb on + strand, within RR42_RS00275 at 80.941 kb on - strand, within RR42_RS00275 at 80.947 kb on - strand, within RR42_RS00275 at 80.950 kb on + strand, within RR42_RS00275 at 80.950 kb on + strand, within RR42_RS00275 at 80.951 kb on - strand, within RR42_RS00275 at 80.965 kb on - strand, within RR42_RS00275 at 80.965 kb on - strand, within RR42_RS00275 at 80.965 kb on - strand, within RR42_RS00275 at 81.151 kb on + strand, within RR42_RS00275 at 81.518 kb on - strand, within RR42_RS00275 at 81.518 kb on - strand, within RR42_RS00275 at 81.604 kb on + strand, within RR42_RS00275 at 81.605 kb on - strand, within RR42_RS00275 at 81.605 kb on - strand, within RR42_RS00275 at 81.605 kb on - strand, within RR42_RS00275 at 81.605 kb on - strand, within RR42_RS00275 at 81.736 kb on + strand, within RR42_RS00275 at 81.736 kb on + strand, within RR42_RS00275 at 81.736 kb on + strand, within RR42_RS00275 at 81.737 kb on - strand, within RR42_RS00275 at 81.742 kb on + strand, within RR42_RS00275 at 81.743 kb on - strand, within RR42_RS00275 at 81.872 kb on - strand, within RR42_RS00275 at 82.107 kb on + strand at 82.277 kb on - strand, within RR42_RS00280 at 82.425 kb on - strand, within RR42_RS00280 at 82.487 kb on + strand, within RR42_RS00280 at 82.487 kb on + strand, within RR42_RS00280 at 82.487 kb on + strand, within RR42_RS00280 at 82.488 kb on - strand, within RR42_RS00280 at 82.488 kb on - strand, within RR42_RS00280 at 82.488 kb on - strand, within RR42_RS00280 at 82.568 kb on - strand, within RR42_RS00280 at 82.599 kb on - strand, within RR42_RS00280 at 82.619 kb on + strand, within RR42_RS00280 at 82.620 kb on - strand, within RR42_RS00280 at 82.620 kb on - strand, within RR42_RS00280 at 82.730 kb on + strand at 82.731 kb on - strand at 82.731 kb on - strand at 82.791 kb on + strand at 82.881 kb on + strand at 82.881 kb on + strand at 82.882 kb on - strand at 82.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 79,661 - -3.0 79,682 + +0.5 79,682 + -0.4 79,682 + +0.7 79,683 - -0.8 79,683 - +0.9 79,683 - -0.4 79,687 + -2.7 79,687 + +1.5 79,688 - +0.4 80,199 - RR42_RS00270 0.64 -3.2 80,337 - RR42_RS00270 0.82 +0.9 80,342 + RR42_RS00270 0.82 +0.1 80,342 + RR42_RS00270 0.82 +1.4 80,343 - RR42_RS00270 0.82 +0.3 80,439 - -3.3 80,439 - -2.9 80,439 - -0.3 80,447 + -2.0 80,447 + -2.5 80,448 - +0.8 80,483 + -0.2 80,483 + +0.2 80,483 + +0.3 80,483 + -0.4 80,484 - -3.3 80,484 - -0.6 80,484 - +0.4 80,484 - +0.7 80,589 + -0.1 80,590 - +0.2 80,590 - -1.2 80,590 - -2.4 80,851 + RR42_RS00275 0.20 -0.6 80,941 - RR42_RS00275 0.25 +0.8 80,947 - RR42_RS00275 0.26 -3.1 80,950 + RR42_RS00275 0.26 +0.1 80,950 + RR42_RS00275 0.26 -3.0 80,951 - RR42_RS00275 0.26 -1.6 80,965 - RR42_RS00275 0.27 +0.0 80,965 - RR42_RS00275 0.27 +0.9 80,965 - RR42_RS00275 0.27 +1.2 81,151 + RR42_RS00275 0.39 -0.7 81,518 - RR42_RS00275 0.62 -1.3 81,518 - RR42_RS00275 0.62 +1.5 81,604 + RR42_RS00275 0.67 +0.6 81,605 - RR42_RS00275 0.68 +0.7 81,605 - RR42_RS00275 0.68 -3.6 81,605 - RR42_RS00275 0.68 +1.4 81,605 - RR42_RS00275 0.68 +0.9 81,736 + RR42_RS00275 0.76 +2.3 81,736 + RR42_RS00275 0.76 -0.4 81,736 + RR42_RS00275 0.76 -2.5 81,737 - RR42_RS00275 0.76 -1.7 81,742 + RR42_RS00275 0.76 +0.9 81,743 - RR42_RS00275 0.76 +2.8 81,872 - RR42_RS00275 0.85 +0.7 82,107 + -1.1 82,277 - RR42_RS00280 0.15 -2.9 82,425 - RR42_RS00280 0.42 -2.8 82,487 + RR42_RS00280 0.53 -1.7 82,487 + RR42_RS00280 0.53 +2.0 82,487 + RR42_RS00280 0.53 +1.1 82,488 - RR42_RS00280 0.53 -1.6 82,488 - RR42_RS00280 0.53 -0.6 82,488 - RR42_RS00280 0.53 +1.1 82,568 - RR42_RS00280 0.68 +1.0 82,599 - RR42_RS00280 0.73 +0.6 82,619 + RR42_RS00280 0.77 -0.6 82,620 - RR42_RS00280 0.77 -2.2 82,620 - RR42_RS00280 0.77 -0.8 82,730 + -0.6 82,731 - +0.8 82,731 - -0.0 82,791 + -3.7 82,881 + +0.4 82,881 + +0.9 82,882 - -0.3 82,953 + +0.0
Or see this region's nucleotide sequence