Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00235 and RR42_RS00240 are separated by 93 nucleotides RR42_RS00240 and RR42_RS00245 are separated by 253 nucleotides RR42_RS00245 and RR42_RS00250 are separated by 17 nucleotides
RR42_RS00235: RR42_RS00235 - membrane protein, at 72,667 to 73,938
_RS00235
RR42_RS00240: RR42_RS00240 - nucleotide pyrophosphohydrolase, at 74,032 to 74,367
_RS00240
RR42_RS00245: RR42_RS00245 - microcystin degradation protein MlrC, at 74,621 to 76,102
_RS00245
RR42_RS00250: RR42_RS00250 - GntR family transcriptional regulator, at 76,120 to 77,166
_RS00250
Position (kb) 74
75
76
77 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 73.771 kb on - strand, within RR42_RS00235 at 73.850 kb on - strand at 73.944 kb on - strand at 74.010 kb on + strand at 74.104 kb on + strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.257 kb on + strand, within RR42_RS00240 at 74.258 kb on - strand, within RR42_RS00240 at 74.659 kb on + strand at 74.660 kb on - strand at 74.660 kb on - strand at 74.850 kb on - strand, within RR42_RS00245 at 75.081 kb on - strand, within RR42_RS00245 at 75.099 kb on - strand, within RR42_RS00245 at 75.314 kb on - strand, within RR42_RS00245 at 75.428 kb on + strand, within RR42_RS00245 at 75.768 kb on - strand, within RR42_RS00245 at 75.768 kb on - strand, within RR42_RS00245 at 75.789 kb on - strand, within RR42_RS00245 at 75.896 kb on - strand, within RR42_RS00245 at 75.953 kb on + strand, within RR42_RS00245 at 75.953 kb on + strand, within RR42_RS00245 at 76.100 kb on + strand at 76.101 kb on - strand at 76.130 kb on + strand at 76.130 kb on + strand at 76.131 kb on - strand at 76.131 kb on - strand at 76.199 kb on - strand at 76.461 kb on - strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.667 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 77.006 kb on - strand, within RR42_RS00250 at 77.069 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 73,771 - RR42_RS00235 0.87 -2.0 73,850 - -3.1 73,944 - +0.1 74,010 + -4.0 74,104 + RR42_RS00240 0.21 -0.5 74,105 - RR42_RS00240 0.22 -0.6 74,105 - RR42_RS00240 0.22 -1.7 74,105 - RR42_RS00240 0.22 +0.4 74,105 - RR42_RS00240 0.22 -1.8 74,257 + RR42_RS00240 0.67 +1.9 74,258 - RR42_RS00240 0.67 -1.7 74,659 + -0.1 74,660 - +2.6 74,660 - -2.6 74,850 - RR42_RS00245 0.15 -1.3 75,081 - RR42_RS00245 0.31 -1.8 75,099 - RR42_RS00245 0.32 -0.2 75,314 - RR42_RS00245 0.47 +0.1 75,428 + RR42_RS00245 0.54 +0.8 75,768 - RR42_RS00245 0.77 -3.0 75,768 - RR42_RS00245 0.77 +3.7 75,789 - RR42_RS00245 0.79 +1.5 75,896 - RR42_RS00245 0.86 +0.2 75,953 + RR42_RS00245 0.90 -2.6 75,953 + RR42_RS00245 0.90 -1.9 76,100 + -3.0 76,101 - +1.5 76,130 + -0.8 76,130 + -2.8 76,131 - -1.5 76,131 - -2.2 76,199 - -2.9 76,461 - RR42_RS00250 0.33 -0.6 76,666 + RR42_RS00250 0.52 -2.7 76,666 + RR42_RS00250 0.52 +0.7 76,667 - RR42_RS00250 0.52 -1.2 76,779 - RR42_RS00250 0.63 -3.3 76,779 - RR42_RS00250 0.63 -0.3 77,006 - RR42_RS00250 0.85 -1.9 77,069 + -4.4
Or see this region's nucleotide sequence