Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00235 and RR42_RS00240 are separated by 93 nucleotides RR42_RS00240 and RR42_RS00245 are separated by 253 nucleotides
RR42_RS00235: RR42_RS00235 - membrane protein, at 72,667 to 73,938
_RS00235
RR42_RS00240: RR42_RS00240 - nucleotide pyrophosphohydrolase, at 74,032 to 74,367
_RS00240
RR42_RS00245: RR42_RS00245 - microcystin degradation protein MlrC, at 74,621 to 76,102
_RS00245
Position (kb) 74
75 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 73.108 kb on - strand, within RR42_RS00235 at 73.500 kb on - strand, within RR42_RS00235 at 73.558 kb on + strand, within RR42_RS00235 at 73.559 kb on - strand, within RR42_RS00235 at 73.771 kb on - strand, within RR42_RS00235 at 73.850 kb on - strand at 73.944 kb on - strand at 74.010 kb on + strand at 74.104 kb on + strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.105 kb on - strand, within RR42_RS00240 at 74.257 kb on + strand, within RR42_RS00240 at 74.258 kb on - strand, within RR42_RS00240 at 74.659 kb on + strand at 74.660 kb on - strand at 74.660 kb on - strand at 74.850 kb on - strand, within RR42_RS00245 at 75.081 kb on - strand, within RR42_RS00245 at 75.099 kb on - strand, within RR42_RS00245 at 75.314 kb on - strand, within RR42_RS00245
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 73,108 - RR42_RS00235 0.35 -3.1 73,500 - RR42_RS00235 0.65 +0.6 73,558 + RR42_RS00235 0.70 -2.3 73,559 - RR42_RS00235 0.70 +0.0 73,771 - RR42_RS00235 0.87 -2.0 73,850 - -3.1 73,944 - +0.1 74,010 + -4.0 74,104 + RR42_RS00240 0.21 -0.5 74,105 - RR42_RS00240 0.22 -0.6 74,105 - RR42_RS00240 0.22 -1.7 74,105 - RR42_RS00240 0.22 +0.4 74,105 - RR42_RS00240 0.22 -1.8 74,257 + RR42_RS00240 0.67 +1.9 74,258 - RR42_RS00240 0.67 -1.7 74,659 + -0.1 74,660 - +2.6 74,660 - -2.6 74,850 - RR42_RS00245 0.15 -1.3 75,081 - RR42_RS00245 0.31 -1.8 75,099 - RR42_RS00245 0.32 -0.2 75,314 - RR42_RS00245 0.47 +0.1
Or see this region's nucleotide sequence