Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00215 and RR42_RS00220 are separated by 40 nucleotides RR42_RS00220 and RR42_RS00225 are separated by 86 nucleotides RR42_RS00225 and RR42_RS00230 are separated by 197 nucleotides
RR42_RS00215: RR42_RS00215 - branched-chain amino acid ABC transporter ATP-binding protein, at 67,946 to 69,235
_RS00215
RR42_RS00220: RR42_RS00220 - peptidase M20, at 69,276 to 70,568
_RS00220
RR42_RS00225: RR42_RS00225 - XRE family transcriptional regulator, at 70,655 to 71,239
_RS00225
RR42_RS00230: RR42_RS00230 - ADP-ribosylglycohydrolase, at 71,437 to 72,531
_RS00230
Position (kb) 69
70
71 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 68.835 kb on - strand, within RR42_RS00215 at 69.445 kb on - strand, within RR42_RS00220 at 69.601 kb on - strand, within RR42_RS00220 at 69.765 kb on + strand, within RR42_RS00220 at 70.069 kb on - strand, within RR42_RS00220 at 70.074 kb on + strand, within RR42_RS00220 at 70.165 kb on + strand, within RR42_RS00220 at 70.165 kb on + strand, within RR42_RS00220 at 70.177 kb on + strand, within RR42_RS00220 at 70.177 kb on + strand, within RR42_RS00220 at 70.177 kb on + strand, within RR42_RS00220 at 70.275 kb on + strand, within RR42_RS00220 at 70.420 kb on - strand, within RR42_RS00220 at 70.420 kb on - strand, within RR42_RS00220 at 70.513 kb on + strand at 70.539 kb on + strand at 70.540 kb on - strand at 70.566 kb on + strand at 70.916 kb on - strand, within RR42_RS00225 at 71.123 kb on + strand, within RR42_RS00225 at 71.123 kb on + strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.391 kb on + strand at 71.563 kb on + strand, within RR42_RS00230 at 71.563 kb on + strand, within RR42_RS00230 at 71.563 kb on + strand, within RR42_RS00230 at 71.564 kb on - strand, within RR42_RS00230 at 71.564 kb on - strand, within RR42_RS00230 at 71.564 kb on - strand, within RR42_RS00230
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 68,835 - RR42_RS00215 0.69 -2.8 69,445 - RR42_RS00220 0.13 +1.1 69,601 - RR42_RS00220 0.25 +0.1 69,765 + RR42_RS00220 0.38 +1.1 70,069 - RR42_RS00220 0.61 -0.8 70,074 + RR42_RS00220 0.62 +0.6 70,165 + RR42_RS00220 0.69 -1.7 70,165 + RR42_RS00220 0.69 -4.0 70,177 + RR42_RS00220 0.70 +0.6 70,177 + RR42_RS00220 0.70 -2.9 70,177 + RR42_RS00220 0.70 -0.1 70,275 + RR42_RS00220 0.77 -3.0 70,420 - RR42_RS00220 0.88 -1.8 70,420 - RR42_RS00220 0.88 +0.6 70,513 + -0.1 70,539 + -1.3 70,540 - -1.5 70,566 + -1.9 70,916 - RR42_RS00225 0.45 -0.0 71,123 + RR42_RS00225 0.80 +1.8 71,123 + RR42_RS00225 0.80 +1.3 71,124 - RR42_RS00225 0.80 -4.5 71,124 - RR42_RS00225 0.80 -3.8 71,124 - RR42_RS00225 0.80 +0.6 71,124 - RR42_RS00225 0.80 -1.1 71,391 + +0.0 71,563 + RR42_RS00230 0.12 -0.3 71,563 + RR42_RS00230 0.12 +1.3 71,563 + RR42_RS00230 0.12 -0.9 71,564 - RR42_RS00230 0.12 -2.2 71,564 - RR42_RS00230 0.12 -1.9 71,564 - RR42_RS00230 0.12 +0.5
Or see this region's nucleotide sequence