Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5568

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5566 and Pf1N1B4_5567 overlap by 49 nucleotidesPf1N1B4_5567 and Pf1N1B4_5568 are separated by 31 nucleotidesPf1N1B4_5568 and Pf1N1B4_5569 are separated by 167 nucleotides Pf1N1B4_5566 - putative replication protein (repA-like), at 338,147 to 339,406 _5566 Pf1N1B4_5567 - transcriptional regulator MvaT, P16 subunit, putative, at 339,358 to 339,717 _5567 Pf1N1B4_5568 - hypothetical protein, at 339,749 to 340,165 _5568 Pf1N1B4_5569 - hypothetical protein, at 340,333 to 340,686 _5569 Position (kb) 339 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 338.815 kb on - strand, within Pf1N1B4_5566at 338.816 kb on + strand, within Pf1N1B4_5566at 338.817 kb on - strand, within Pf1N1B4_5566at 338.817 kb on - strand, within Pf1N1B4_5566at 338.817 kb on - strandat 338.861 kb on - strand, within Pf1N1B4_5566at 338.862 kb on + strand, within Pf1N1B4_5566at 338.862 kb on + strand, within Pf1N1B4_5566at 338.891 kb on + strandat 338.892 kb on - strand, within Pf1N1B4_5566at 338.984 kb on + strand, within Pf1N1B4_5566at 338.984 kb on + strand, within Pf1N1B4_5566at 338.984 kb on + strandat 339.012 kb on + strand, within Pf1N1B4_5566at 339.012 kb on + strandat 339.012 kb on + strandat 339.022 kb on + strand, within Pf1N1B4_5566at 339.105 kb on + strand, within Pf1N1B4_5566at 339.105 kb on + strand, within Pf1N1B4_5566at 339.106 kb on - strand, within Pf1N1B4_5566at 339.290 kb on + strandat 339.290 kb on + strandat 339.291 kb on - strandat 339.307 kb on + strandat 339.307 kb on + strandat 339.308 kb on - strandat 339.310 kb on + strandat 339.310 kb on + strandat 339.310 kb on + strandat 339.310 kb on + strandat 339.317 kb on + strandat 339.320 kb on + strandat 339.320 kb on + strandat 339.320 kb on + strandat 339.320 kb on + strandat 339.353 kb on + strandat 339.353 kb on + strandat 339.353 kb on + strandat 339.354 kb on - strandat 339.402 kb on - strandat 339.448 kb on + strand, within Pf1N1B4_5567at 339.449 kb on - strand, within Pf1N1B4_5567at 339.482 kb on + strand, within Pf1N1B4_5567at 339.482 kb on + strand, within Pf1N1B4_5567at 339.483 kb on - strand, within Pf1N1B4_5567at 339.483 kb on - strand, within Pf1N1B4_5567at 339.483 kb on - strand, within Pf1N1B4_5567at 339.483 kb on - strand, within Pf1N1B4_5567at 339.499 kb on + strand, within Pf1N1B4_5567at 339.654 kb on + strand, within Pf1N1B4_5567at 339.711 kb on - strandat 339.897 kb on + strand, within Pf1N1B4_5568at 339.897 kb on + strand, within Pf1N1B4_5568at 339.897 kb on + strand, within Pf1N1B4_5568at 339.897 kb on + strandat 339.898 kb on - strand, within Pf1N1B4_5568at 339.898 kb on - strand, within Pf1N1B4_5568at 339.898 kb on - strand, within Pf1N1B4_5568at 340.165 kb on + strandat 340.165 kb on + strandat 340.235 kb on - strandat 340.235 kb on - strandat 340.235 kb on - strandat 340.235 kb on - strandat 340.294 kb on + strandat 340.294 kb on + strandat 340.312 kb on - strandat 340.329 kb on - strandat 340.329 kb on - strandat 340.329 kb on - strandat 340.600 kb on + strand, within Pf1N1B4_5569at 340.601 kb on - strand, within Pf1N1B4_5569at 340.657 kb on - strandat 340.730 kb on + strandat 340.730 kb on + strandat 340.731 kb on - strandat 340.752 kb on + strandat 340.752 kb on + strandat 340.753 kb on - strandat 340.991 kb on + strandat 340.992 kb on - strandat 341.126 kb on - strandat 341.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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338,815 - Pf1N1B4_5566 0.53 -0.6
338,816 + Pf1N1B4_5566 0.53 -1.0
338,817 - Pf1N1B4_5566 0.53 +1.0
338,817 - Pf1N1B4_5566 0.53 +0.6
338,817 - -1.0
338,861 - Pf1N1B4_5566 0.57 -0.2
338,862 + Pf1N1B4_5566 0.57 +0.8
338,862 + Pf1N1B4_5566 0.57 -1.6
338,891 + +1.6
338,892 - Pf1N1B4_5566 0.59 +0.4
338,984 + Pf1N1B4_5566 0.66 -0.5
338,984 + Pf1N1B4_5566 0.66 +0.0
338,984 + -1.0
339,012 + Pf1N1B4_5566 0.69 -2.0
339,012 + +0.0
339,012 + +0.0
339,022 + Pf1N1B4_5566 0.69 +0.5
339,105 + Pf1N1B4_5566 0.76 +0.0
339,105 + Pf1N1B4_5566 0.76 +0.6
339,106 - Pf1N1B4_5566 0.76 -2.0
339,290 + -0.2
339,290 + +0.0
339,291 - +2.0
339,307 + +1.6
339,307 + +1.0
339,308 - +0.3
339,310 + +0.5
339,310 + +0.0
339,310 + -0.3
339,310 + +1.6
339,317 + +1.6
339,320 + +0.0
339,320 + -1.2
339,320 + -0.4
339,320 + -2.0
339,353 + +1.6
339,353 + -1.4
339,353 + -0.4
339,354 - -0.6
339,402 - -0.6
339,448 + Pf1N1B4_5567 0.25 -0.8
339,449 - Pf1N1B4_5567 0.25 +1.6
339,482 + Pf1N1B4_5567 0.34 +0.2
339,482 + Pf1N1B4_5567 0.34 -0.6
339,483 - Pf1N1B4_5567 0.35 -1.6
339,483 - Pf1N1B4_5567 0.35 +1.0
339,483 - Pf1N1B4_5567 0.35 +2.0
339,483 - Pf1N1B4_5567 0.35 -0.2
339,499 + Pf1N1B4_5567 0.39 -0.6
339,654 + Pf1N1B4_5567 0.82 -1.0
339,711 - +0.6
339,897 + Pf1N1B4_5568 0.35 -0.8
339,897 + Pf1N1B4_5568 0.35 +1.3
339,897 + Pf1N1B4_5568 0.35 -1.8
339,897 + +0.0
339,898 - Pf1N1B4_5568 0.36 -1.7
339,898 - Pf1N1B4_5568 0.36 +0.4
339,898 - Pf1N1B4_5568 0.36 -2.3
340,165 + +0.0
340,165 + -1.0
340,235 - +2.3
340,235 - +0.8
340,235 - -0.3
340,235 - -1.9
340,294 + +2.3
340,294 + +0.8
340,312 - +0.6
340,329 - +0.2
340,329 - +0.0
340,329 - +1.2
340,600 + Pf1N1B4_5569 0.75 +0.0
340,601 - Pf1N1B4_5569 0.76 -0.6
340,657 - -0.6
340,730 + +2.0
340,730 + -1.0
340,731 - +0.2
340,752 + +0.2
340,752 + -1.0
340,753 - +1.0
340,991 + +0.0
340,992 - -1.0
341,126 - +0.3
341,126 - +0.0

Or see this region's nucleotide sequence