Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5253 and Pf1N1B4_5254 are separated by 277 nucleotides
Pf1N1B4_5253 - hypothetical protein, at 11,284 to 12,045
_5253
Pf1N1B4_5254 - hypothetical protein, at 12,323 to 13,168
_5254
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 11.408 kb on + strand, within Pf1N1B4_5253 at 11.408 kb on + strand, within Pf1N1B4_5253 at 11.408 kb on + strand, within Pf1N1B4_5253 at 11.408 kb on + strand, within Pf1N1B4_5253 at 11.409 kb on - strand, within Pf1N1B4_5253 at 11.423 kb on + strand, within Pf1N1B4_5253 at 11.423 kb on + strand, within Pf1N1B4_5253 at 11.424 kb on - strand, within Pf1N1B4_5253 at 11.432 kb on + strand, within Pf1N1B4_5253 at 11.432 kb on + strand at 11.433 kb on - strand, within Pf1N1B4_5253 at 11.790 kb on - strand at 11.790 kb on - strand, within Pf1N1B4_5253 at 11.864 kb on + strand, within Pf1N1B4_5253 at 11.920 kb on + strand, within Pf1N1B4_5253 at 11.920 kb on + strand, within Pf1N1B4_5253 at 11.920 kb on + strand, within Pf1N1B4_5253 at 11.920 kb on + strand, within Pf1N1B4_5253 at 11.921 kb on - strand, within Pf1N1B4_5253 at 11.921 kb on - strand, within Pf1N1B4_5253 at 11.924 kb on + strand, within Pf1N1B4_5253 at 11.924 kb on + strand, within Pf1N1B4_5253 at 11.924 kb on + strand, within Pf1N1B4_5253 at 11.925 kb on - strand, within Pf1N1B4_5253 at 11.925 kb on - strand, within Pf1N1B4_5253 at 11.969 kb on + strand at 11.969 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.033 kb on + strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.034 kb on - strand at 12.068 kb on - strand at 12.068 kb on - strand at 12.153 kb on + strand at 12.418 kb on - strand, within Pf1N1B4_5254 at 12.485 kb on - strand, within Pf1N1B4_5254 at 12.485 kb on - strand, within Pf1N1B4_5254 at 12.485 kb on - strand, within Pf1N1B4_5254 at 12.546 kb on + strand, within Pf1N1B4_5254 at 12.547 kb on - strand at 12.547 kb on - strand, within Pf1N1B4_5254 at 12.549 kb on + strand, within Pf1N1B4_5254 at 12.549 kb on + strand, within Pf1N1B4_5254 at 12.549 kb on + strand, within Pf1N1B4_5254 at 12.741 kb on + strand, within Pf1N1B4_5254 at 12.859 kb on + strand, within Pf1N1B4_5254 at 12.860 kb on - strand at 12.860 kb on - strand, within Pf1N1B4_5254 at 12.952 kb on + strand, within Pf1N1B4_5254 at 12.953 kb on - strand, within Pf1N1B4_5254 at 13.077 kb on + strand, within Pf1N1B4_5254 at 13.086 kb on + strand at 13.086 kb on + strand at 13.175 kb on - strand at 13.175 kb on - strand at 13.185 kb on + strand at 13.185 kb on + strand at 13.185 kb on + strand at 13.185 kb on + strand at 13.186 kb on - strand at 13.186 kb on - strand at 13.200 kb on - strand at 13.212 kb on + strand at 13.213 kb on - strand at 13.224 kb on + strand at 13.297 kb on + strand at 13.382 kb on + strand at 13.410 kb on - strand at 13.525 kb on + strand at 13.754 kb on + strand at 13.822 kb on - strand at 13.822 kb on - strand at 13.822 kb on - strand at 13.964 kb on - strand at 14.101 kb on + strand at 14.148 kb on + strand at 14.148 kb on + strand at 14.149 kb on - strand at 14.149 kb on - strand at 14.149 kb on - strand at 14.149 kb on - strand at 14.149 kb on - strand at 14.162 kb on + strand at 14.162 kb on + strand at 14.163 kb on - strand at 14.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 11,408 + Pf1N1B4_5253 0.16 -1.8 11,408 + Pf1N1B4_5253 0.16 -1.8 11,408 + Pf1N1B4_5253 0.16 +0.1 11,408 + Pf1N1B4_5253 0.16 -0.4 11,409 - Pf1N1B4_5253 0.16 -0.6 11,423 + Pf1N1B4_5253 0.18 -0.7 11,423 + Pf1N1B4_5253 0.18 -0.6 11,424 - Pf1N1B4_5253 0.18 +0.0 11,432 + Pf1N1B4_5253 0.19 -1.0 11,432 + -2.6 11,433 - Pf1N1B4_5253 0.20 -1.6 11,790 - +0.0 11,790 - Pf1N1B4_5253 0.66 -1.8 11,864 + Pf1N1B4_5253 0.76 +1.0 11,920 + Pf1N1B4_5253 0.83 +0.6 11,920 + Pf1N1B4_5253 0.83 -0.6 11,920 + Pf1N1B4_5253 0.83 -1.8 11,920 + Pf1N1B4_5253 0.83 -1.6 11,921 - Pf1N1B4_5253 0.84 +1.0 11,921 - Pf1N1B4_5253 0.84 +0.8 11,924 + Pf1N1B4_5253 0.84 +0.5 11,924 + Pf1N1B4_5253 0.84 +2.6 11,924 + Pf1N1B4_5253 0.84 -0.3 11,925 - Pf1N1B4_5253 0.84 -1.6 11,925 - Pf1N1B4_5253 0.84 +0.9 11,969 + -0.6 11,969 + +0.0 12,033 + +0.6 12,033 + +0.6 12,033 + -1.0 12,033 + +0.0 12,034 - -0.4 12,034 - -2.0 12,034 - -3.0 12,068 - -0.6 12,068 - -0.2 12,153 + +1.0 12,418 - Pf1N1B4_5254 0.11 -1.6 12,485 - Pf1N1B4_5254 0.19 +0.0 12,485 - Pf1N1B4_5254 0.19 +0.0 12,485 - Pf1N1B4_5254 0.19 -1.3 12,546 + Pf1N1B4_5254 0.26 -0.6 12,547 - -1.0 12,547 - Pf1N1B4_5254 0.26 -0.7 12,549 + Pf1N1B4_5254 0.27 -1.0 12,549 + Pf1N1B4_5254 0.27 -1.6 12,549 + Pf1N1B4_5254 0.27 -1.0 12,741 + Pf1N1B4_5254 0.49 +0.0 12,859 + Pf1N1B4_5254 0.63 +1.0 12,860 - -1.6 12,860 - Pf1N1B4_5254 0.63 -1.0 12,952 + Pf1N1B4_5254 0.74 +0.0 12,953 - Pf1N1B4_5254 0.74 -0.8 13,077 + Pf1N1B4_5254 0.89 -0.4 13,086 + +0.3 13,086 + -0.6 13,175 - -0.4 13,175 - +0.0 13,185 + -1.0 13,185 + +0.1 13,185 + +0.4 13,185 + +0.6 13,186 - -0.8 13,186 - +1.0 13,200 - -0.6 13,212 + -0.3 13,213 - -1.0 13,224 + +0.0 13,297 + +0.2 13,382 + -0.7 13,410 - +0.3 13,525 + +0.5 13,754 + -0.3 13,822 - +0.7 13,822 - +2.0 13,822 - -1.0 13,964 - +1.8 14,101 + +0.6 14,148 + +0.0 14,148 + +0.0 14,149 - +0.8 14,149 - -1.3 14,149 - +0.0 14,149 - -1.4 14,149 - -1.0 14,162 + +1.5 14,162 + -0.5 14,163 - +1.1 14,163 - -0.3
Or see this region's nucleotide sequence