Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4671

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4670 and Pf1N1B4_4671 are separated by 285 nucleotidesPf1N1B4_4671 and Pf1N1B4_4672 are separated by 151 nucleotides Pf1N1B4_4670 - Sensory box/GGDEF family protein, at 5,149,861 to 5,151,942 _4670 Pf1N1B4_4671 - Short-chain dehydrogenase/reductase SDR, at 5,152,228 to 5,152,974 _4671 Pf1N1B4_4672 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,153,126 to 5,154,535 _4672 Position (kb) 5152 5153Strain fitness (log2 ratio) -2 -1 0 1 2at 5151.406 kb on + strand, within Pf1N1B4_4670at 5151.407 kb on - strandat 5151.407 kb on - strand, within Pf1N1B4_4670at 5151.646 kb on + strand, within Pf1N1B4_4670at 5151.647 kb on - strand, within Pf1N1B4_4670at 5151.865 kb on + strandat 5151.866 kb on - strandat 5152.113 kb on + strandat 5152.114 kb on - strandat 5152.114 kb on - strandat 5152.324 kb on + strandat 5152.687 kb on + strand, within Pf1N1B4_4671at 5152.687 kb on + strand, within Pf1N1B4_4671at 5152.688 kb on - strand, within Pf1N1B4_4671at 5152.688 kb on - strand, within Pf1N1B4_4671at 5152.688 kb on - strand, within Pf1N1B4_4671at 5152.696 kb on + strand, within Pf1N1B4_4671at 5152.799 kb on - strand, within Pf1N1B4_4671at 5152.799 kb on - strand, within Pf1N1B4_4671at 5153.210 kb on - strandat 5153.674 kb on - strand, within Pf1N1B4_4672

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,151,406 + Pf1N1B4_4670 0.74 +0.4
5,151,407 - -1.2
5,151,407 - Pf1N1B4_4670 0.74 -1.0
5,151,646 + Pf1N1B4_4670 0.86 -0.2
5,151,647 - Pf1N1B4_4670 0.86 -0.4
5,151,865 + +1.0
5,151,866 - +2.0
5,152,113 + -1.2
5,152,114 - -0.4
5,152,114 - -1.2
5,152,324 + +1.4
5,152,687 + Pf1N1B4_4671 0.61 -2.0
5,152,687 + Pf1N1B4_4671 0.61 -2.0
5,152,688 - Pf1N1B4_4671 0.62 -0.2
5,152,688 - Pf1N1B4_4671 0.62 -0.6
5,152,688 - Pf1N1B4_4671 0.62 -2.4
5,152,696 + Pf1N1B4_4671 0.63 -1.0
5,152,799 - Pf1N1B4_4671 0.76 +1.0
5,152,799 - Pf1N1B4_4671 0.76 -0.6
5,153,210 - -2.0
5,153,674 - Pf1N1B4_4672 0.39 +1.4

Or see this region's nucleotide sequence