Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4528 and Pf1N1B4_4529 are separated by 190 nucleotides Pf1N1B4_4529 and Pf1N1B4_4530 are separated by 336 nucleotides Pf1N1B4_4530 and Pf1N1B4_4531 are separated by 12 nucleotides
Pf1N1B4_4528 - Predicted aminoglycoside phosphotransferase, at 4,991,950 to 4,993,017
_4528
Pf1N1B4_4529 - FIG00966904: hypothetical protein, at 4,993,208 to 4,993,603
_4529
Pf1N1B4_4530 - Phophatidylinositol-4-phosphate 5-kinase (EC 2.7.1.68), at 4,993,940 to 4,994,482
_4530
Pf1N1B4_4531 - FIG01221261: hypothetical protein, at 4,994,495 to 4,996,504
_4531
Position (kb)
4993
4994
4995 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4993.008 kb on + strand at 4993.030 kb on + strand at 4993.065 kb on + strand at 4993.106 kb on + strand at 4993.106 kb on + strand at 4993.106 kb on + strand at 4993.106 kb on + strand at 4993.106 kb on + strand at 4993.107 kb on - strand at 4993.107 kb on - strand at 4993.107 kb on - strand at 4993.167 kb on - strand at 4993.273 kb on - strand, within Pf1N1B4_4529 at 4993.739 kb on + strand at 4993.868 kb on - strand at 4993.868 kb on - strand at 4994.143 kb on - strand, within Pf1N1B4_4530 at 4994.143 kb on - strand, within Pf1N1B4_4530 at 4994.179 kb on - strand, within Pf1N1B4_4530 at 4994.322 kb on + strand, within Pf1N1B4_4530 at 4994.656 kb on + strand at 4994.657 kb on - strand at 4994.817 kb on + strand, within Pf1N1B4_4531
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,993,008 + +0.9 4,993,030 + +1.4 4,993,065 + +1.0 4,993,106 + -1.0 4,993,106 + +1.8 4,993,106 + -3.1 4,993,106 + -2.9 4,993,106 + -0.6 4,993,107 - +0.9 4,993,107 - -0.6 4,993,107 - +0.4 4,993,167 - -1.7 4,993,273 - Pf1N1B4_4529 0.16 +1.0 4,993,739 + -1.6 4,993,868 - +0.2 4,993,868 - +2.3 4,994,143 - Pf1N1B4_4530 0.37 -0.1 4,994,143 - Pf1N1B4_4530 0.37 -1.1 4,994,179 - Pf1N1B4_4530 0.44 -1.0 4,994,322 + Pf1N1B4_4530 0.70 -2.6 4,994,656 + +0.4 4,994,657 - -0.6 4,994,817 + Pf1N1B4_4531 0.16 -0.6
Or see this region's nucleotide sequence