Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07830

Experiment: Formate deepwell casamino FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07825 and MMP_RS07830 are separated by 17 nucleotidesMMP_RS07830 and MMP_RS07835 are separated by 107 nucleotides MMP_RS07825: MMP_RS07825 - preprotein translocase subunit SecD, at 1,481,881 to 1,483,047 _RS07825 MMP_RS07830: MMP_RS07830 - protein translocase subunit SecF, at 1,483,065 to 1,483,910 _RS07830 MMP_RS07835: MMP_RS07835 - TldD/PmbA family protein, at 1,484,018 to 1,485,280 _RS07835 Position (kb) 1483 1484Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1482.259 kb on - strandat 1482.388 kb on + strandat 1482.503 kb on + strandat 1483.093 kb on - strandat 1483.792 kb on + strandat 1483.963 kb on + strandat 1483.966 kb on - strandat 1483.982 kb on + strandat 1483.994 kb on - strandat 1484.241 kb on - strand, within MMP_RS07835at 1484.876 kb on + strand, within MMP_RS07835

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate deepwell casamino FREE
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1,482,259 - -3.9
1,482,388 + -1.7
1,482,503 + -1.1
1,483,093 - -0.7
1,483,792 + -2.6
1,483,963 + -0.6
1,483,966 - -0.6
1,483,982 + +0.3
1,483,994 - +0.2
1,484,241 - MMP_RS07835 0.18 +0.2
1,484,876 + MMP_RS07835 0.68 -0.0

Or see this region's nucleotide sequence