Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06240

Experiment: Formate deepwell casamino FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06235 and MMP_RS06240 are separated by 18 nucleotidesMMP_RS06240 and MMP_RS06245 are separated by 38 nucleotidesMMP_RS06245 and MMP_RS06250 are separated by 41 nucleotides MMP_RS06235: MMP_RS06235 - hydroxymethylglutaryl-CoA synthase, at 1,198,055 to 1,199,104 _RS06235 MMP_RS06240: MMP_RS06240 - thiolase domain-containing protein, at 1,199,123 to 1,200,301 _RS06240 MMP_RS06245: MMP_RS06245 - Zn-ribbon domain-containing OB-fold protein, at 1,200,340 to 1,200,732 _RS06245 MMP_RS06250: MMP_RS06250 - hypothetical protein, at 1,200,774 to 1,201,451 _RS06250 Position (kb) 1199 1200 1201Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1198.458 kb on + strandat 1199.556 kb on + strandat 1199.556 kb on + strandat 1199.650 kb on - strandat 1199.888 kb on + strandat 1200.236 kb on + strandat 1200.312 kb on + strandat 1200.766 kb on + strandat 1200.776 kb on + strandat 1200.780 kb on + strandat 1200.826 kb on - strandat 1200.857 kb on + strand, within MMP_RS06250at 1200.917 kb on - strand, within MMP_RS06250at 1201.002 kb on - strand, within MMP_RS06250at 1201.150 kb on + strand, within MMP_RS06250at 1201.279 kb on + strand, within MMP_RS06250

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate deepwell casamino FREE
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1,198,458 + -4.0
1,199,556 + -3.8
1,199,556 + -3.7
1,199,650 - -2.9
1,199,888 + -3.9
1,200,236 + -2.5
1,200,312 + -1.6
1,200,766 + -0.5
1,200,776 + +0.0
1,200,780 + +0.3
1,200,826 - -0.7
1,200,857 + MMP_RS06250 0.12 +0.6
1,200,917 - MMP_RS06250 0.21 -0.0
1,201,002 - MMP_RS06250 0.34 -0.0
1,201,150 + MMP_RS06250 0.55 +0.6
1,201,279 + MMP_RS06250 0.74 +0.0

Or see this region's nucleotide sequence