Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3941

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3939 and Ac3H11_3940 are separated by 233 nucleotidesAc3H11_3940 and Ac3H11_3941 overlap by 4 nucleotidesAc3H11_3941 and Ac3H11_3942 are separated by 39 nucleotides Ac3H11_3939 - Inner membrane protein YqiK, at 156,735 to 158,861 _3939 Ac3H11_3940 - hypothetical protein, at 159,095 to 159,268 _3940 Ac3H11_3941 - FIG01123212: hypothetical protein, at 159,265 to 164,895 _3941 Ac3H11_3942 - Putative DMT superfamily metabolite efflux protein precursor, at 164,935 to 165,843 _3942 Position (kb) 159 160 161 162 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 158.860 kb on - strandat 158.940 kb on + strandat 159.110 kb on + strandat 159.270 kb on + strandat 159.271 kb on - strandat 159.271 kb on - strandat 159.271 kb on - strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.280 kb on - strandat 159.343 kb on + strandat 159.509 kb on - strandat 159.509 kb on - strandat 159.595 kb on + strandat 159.595 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.724 kb on + strandat 159.725 kb on - strandat 159.725 kb on - strandat 159.725 kb on - strandat 159.730 kb on + strandat 159.730 kb on + strandat 159.731 kb on - strandat 159.731 kb on - strandat 159.731 kb on - strandat 159.731 kb on - strandat 159.733 kb on + strandat 159.734 kb on - strandat 159.734 kb on - strandat 159.734 kb on - strandat 159.862 kb on + strand, within Ac3H11_3941at 160.058 kb on - strand, within Ac3H11_3941at 160.058 kb on - strand, within Ac3H11_3941at 160.112 kb on - strand, within Ac3H11_3941at 160.174 kb on + strand, within Ac3H11_3941at 160.175 kb on - strand, within Ac3H11_3941at 160.175 kb on - strand, within Ac3H11_3941at 160.279 kb on + strand, within Ac3H11_3941at 160.280 kb on - strand, within Ac3H11_3941at 160.280 kb on - strand, within Ac3H11_3941at 160.280 kb on - strand, within Ac3H11_3941at 160.282 kb on + strand, within Ac3H11_3941at 160.282 kb on + strand, within Ac3H11_3941at 160.387 kb on + strand, within Ac3H11_3941at 160.388 kb on - strand, within Ac3H11_3941at 160.388 kb on - strand, within Ac3H11_3941at 160.388 kb on - strand, within Ac3H11_3941at 160.388 kb on - strand, within Ac3H11_3941at 160.388 kb on - strand, within Ac3H11_3941at 160.396 kb on + strand, within Ac3H11_3941at 160.396 kb on + strand, within Ac3H11_3941at 160.397 kb on - strand, within Ac3H11_3941at 160.397 kb on - strand, within Ac3H11_3941at 160.465 kb on + strand, within Ac3H11_3941at 160.465 kb on + strand, within Ac3H11_3941at 160.466 kb on - strand, within Ac3H11_3941at 160.513 kb on + strand, within Ac3H11_3941at 160.513 kb on + strand, within Ac3H11_3941at 160.513 kb on + strand, within Ac3H11_3941at 160.750 kb on + strand, within Ac3H11_3941at 160.793 kb on - strand, within Ac3H11_3941at 160.952 kb on + strand, within Ac3H11_3941at 160.952 kb on + strand, within Ac3H11_3941at 160.952 kb on + strand, within Ac3H11_3941at 160.953 kb on - strand, within Ac3H11_3941at 160.953 kb on - strand, within Ac3H11_3941at 161.363 kb on - strand, within Ac3H11_3941at 161.620 kb on + strand, within Ac3H11_3941at 161.764 kb on + strand, within Ac3H11_3941at 162.040 kb on + strand, within Ac3H11_3941at 162.136 kb on + strand, within Ac3H11_3941at 162.137 kb on - strand, within Ac3H11_3941at 162.331 kb on + strand, within Ac3H11_3941at 162.416 kb on - strand, within Ac3H11_3941at 162.416 kb on - strand, within Ac3H11_3941at 162.718 kb on + strand, within Ac3H11_3941at 162.719 kb on - strand, within Ac3H11_3941at 162.774 kb on + strand, within Ac3H11_3941at 162.775 kb on - strand, within Ac3H11_3941at 163.288 kb on + strand, within Ac3H11_3941at 163.288 kb on + strand, within Ac3H11_3941at 163.289 kb on - strand, within Ac3H11_3941at 163.417 kb on + strand, within Ac3H11_3941at 163.417 kb on + strand, within Ac3H11_3941at 163.418 kb on - strand, within Ac3H11_3941at 163.580 kb on - strand, within Ac3H11_3941at 163.580 kb on - strand, within Ac3H11_3941at 163.736 kb on - strand, within Ac3H11_3941at 163.796 kb on - strand, within Ac3H11_3941at 163.796 kb on - strand, within Ac3H11_3941at 163.796 kb on - strand, within Ac3H11_3941at 163.796 kb on - strand, within Ac3H11_3941at 163.796 kb on - strand, within Ac3H11_3941at 163.796 kb on - strand, within Ac3H11_3941at 163.846 kb on + strand, within Ac3H11_3941at 163.846 kb on + strand, within Ac3H11_3941at 163.847 kb on - strand, within Ac3H11_3941at 163.847 kb on - strand, within Ac3H11_3941at 164.209 kb on + strand, within Ac3H11_3941at 164.330 kb on - strand, within Ac3H11_3941at 164.764 kb on + strandat 165.338 kb on + strand, within Ac3H11_3942at 165.338 kb on + strand, within Ac3H11_3942at 165.339 kb on - strand, within Ac3H11_3942at 165.339 kb on - strand, within Ac3H11_3942at 165.339 kb on - strand, within Ac3H11_3942at 165.372 kb on - strand, within Ac3H11_3942at 165.372 kb on - strand, within Ac3H11_3942at 165.372 kb on - strand, within Ac3H11_3942at 165.560 kb on + strand, within Ac3H11_3942at 165.560 kb on + strand, within Ac3H11_3942at 165.561 kb on - strand, within Ac3H11_3942at 165.561 kb on - strand, within Ac3H11_3942at 165.561 kb on - strand, within Ac3H11_3942at 165.561 kb on - strand, within Ac3H11_3942at 165.597 kb on - strand, within Ac3H11_3942at 165.819 kb on + strandat 165.819 kb on + strandat 165.819 kb on + strandat 165.820 kb on - strandat 165.847 kb on + strandat 165.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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158,860 - -0.5
158,940 + +0.1
159,110 + +0.2
159,270 + -0.9
159,271 - -1.0
159,271 - +0.6
159,271 - +0.4
159,279 + +0.0
159,279 + +0.8
159,280 - +0.4
159,343 + +0.8
159,509 - +0.3
159,509 - -0.2
159,595 + -0.1
159,595 + +0.2
159,724 + +0.9
159,724 + +1.9
159,724 + +1.1
159,724 + +1.7
159,724 + -0.2
159,724 + +0.9
159,725 - -0.5
159,725 - +1.1
159,725 - -0.1
159,730 + -2.1
159,730 + -0.8
159,731 - -0.4
159,731 - +0.9
159,731 - -0.1
159,731 - -1.3
159,733 + +2.5
159,734 - +0.5
159,734 - +0.6
159,734 - +0.4
159,862 + Ac3H11_3941 0.11 -0.0
160,058 - Ac3H11_3941 0.14 -0.8
160,058 - Ac3H11_3941 0.14 +1.4
160,112 - Ac3H11_3941 0.15 -0.2
160,174 + Ac3H11_3941 0.16 -0.3
160,175 - Ac3H11_3941 0.16 -1.4
160,175 - Ac3H11_3941 0.16 -0.1
160,279 + Ac3H11_3941 0.18 -0.3
160,280 - Ac3H11_3941 0.18 +0.4
160,280 - Ac3H11_3941 0.18 -0.8
160,280 - Ac3H11_3941 0.18 -0.2
160,282 + Ac3H11_3941 0.18 +0.7
160,282 + Ac3H11_3941 0.18 +0.1
160,387 + Ac3H11_3941 0.20 +0.1
160,388 - Ac3H11_3941 0.20 +0.4
160,388 - Ac3H11_3941 0.20 +0.3
160,388 - Ac3H11_3941 0.20 +0.0
160,388 - Ac3H11_3941 0.20 +0.3
160,388 - Ac3H11_3941 0.20 -0.4
160,396 + Ac3H11_3941 0.20 -0.4
160,396 + Ac3H11_3941 0.20 -2.0
160,397 - Ac3H11_3941 0.20 -0.5
160,397 - Ac3H11_3941 0.20 +0.3
160,465 + Ac3H11_3941 0.21 +0.0
160,465 + Ac3H11_3941 0.21 -0.6
160,466 - Ac3H11_3941 0.21 +0.5
160,513 + Ac3H11_3941 0.22 -0.1
160,513 + Ac3H11_3941 0.22 +0.1
160,513 + Ac3H11_3941 0.22 +1.1
160,750 + Ac3H11_3941 0.26 +0.6
160,793 - Ac3H11_3941 0.27 -0.3
160,952 + Ac3H11_3941 0.30 +1.0
160,952 + Ac3H11_3941 0.30 +0.6
160,952 + Ac3H11_3941 0.30 +1.2
160,953 - Ac3H11_3941 0.30 -0.4
160,953 - Ac3H11_3941 0.30 +0.4
161,363 - Ac3H11_3941 0.37 +0.6
161,620 + Ac3H11_3941 0.42 +0.0
161,764 + Ac3H11_3941 0.44 +0.6
162,040 + Ac3H11_3941 0.49 -1.1
162,136 + Ac3H11_3941 0.51 +0.1
162,137 - Ac3H11_3941 0.51 +1.1
162,331 + Ac3H11_3941 0.54 +0.5
162,416 - Ac3H11_3941 0.56 +0.3
162,416 - Ac3H11_3941 0.56 +0.5
162,718 + Ac3H11_3941 0.61 -0.5
162,719 - Ac3H11_3941 0.61 -0.8
162,774 + Ac3H11_3941 0.62 -0.4
162,775 - Ac3H11_3941 0.62 +0.9
163,288 + Ac3H11_3941 0.71 +0.1
163,288 + Ac3H11_3941 0.71 -0.5
163,289 - Ac3H11_3941 0.71 +1.3
163,417 + Ac3H11_3941 0.74 +0.5
163,417 + Ac3H11_3941 0.74 -0.1
163,418 - Ac3H11_3941 0.74 +0.0
163,580 - Ac3H11_3941 0.77 +1.1
163,580 - Ac3H11_3941 0.77 +0.1
163,736 - Ac3H11_3941 0.79 -0.2
163,796 - Ac3H11_3941 0.80 -0.7
163,796 - Ac3H11_3941 0.80 -0.1
163,796 - Ac3H11_3941 0.80 -0.1
163,796 - Ac3H11_3941 0.80 +0.1
163,796 - Ac3H11_3941 0.80 +0.2
163,796 - Ac3H11_3941 0.80 +0.1
163,846 + Ac3H11_3941 0.81 +0.9
163,846 + Ac3H11_3941 0.81 +0.8
163,847 - Ac3H11_3941 0.81 -1.0
163,847 - Ac3H11_3941 0.81 +0.3
164,209 + Ac3H11_3941 0.88 +0.1
164,330 - Ac3H11_3941 0.90 +0.7
164,764 + +1.5
165,338 + Ac3H11_3942 0.44 +0.4
165,338 + Ac3H11_3942 0.44 -0.0
165,339 - Ac3H11_3942 0.44 -1.0
165,339 - Ac3H11_3942 0.44 +0.2
165,339 - Ac3H11_3942 0.44 -0.2
165,372 - Ac3H11_3942 0.48 +0.3
165,372 - Ac3H11_3942 0.48 -0.3
165,372 - Ac3H11_3942 0.48 +0.9
165,560 + Ac3H11_3942 0.69 +0.1
165,560 + Ac3H11_3942 0.69 -0.1
165,561 - Ac3H11_3942 0.69 +0.0
165,561 - Ac3H11_3942 0.69 -0.5
165,561 - Ac3H11_3942 0.69 -0.2
165,561 - Ac3H11_3942 0.69 +2.1
165,597 - Ac3H11_3942 0.73 +0.6
165,819 + -0.1
165,819 + +0.5
165,819 + +1.0
165,820 - +0.9
165,847 + +0.0
165,850 - +0.2

Or see this region's nucleotide sequence