Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3936 and Ac3H11_3937 overlap by 4 nucleotides Ac3H11_3937 and Ac3H11_3938 are separated by 68 nucleotides Ac3H11_3938 and Ac3H11_3939 are separated by 103 nucleotides
Ac3H11_3936 - PspA/IM30 family protein, at 154,738 to 155,481
_3936
Ac3H11_3937 - hypothetical protein, at 155,478 to 155,918
_3937
Ac3H11_3938 - hypothetical protein, at 155,987 to 156,631
_3938
Ac3H11_3939 - Inner membrane protein YqiK, at 156,735 to 158,861
_3939
Position (kb) 155
156
157 Strain fitness (log2 ratio) -1
0
1
2
3 at 155.074 kb on + strand, within Ac3H11_3936 at 155.074 kb on + strand, within Ac3H11_3936 at 155.075 kb on - strand, within Ac3H11_3936 at 155.707 kb on - strand, within Ac3H11_3937 at 155.964 kb on + strand at 155.964 kb on + strand at 155.964 kb on + strand at 155.964 kb on + strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 156.035 kb on + strand at 156.035 kb on + strand at 156.035 kb on + strand at 156.036 kb on - strand at 156.065 kb on + strand, within Ac3H11_3938 at 156.065 kb on + strand, within Ac3H11_3938 at 156.065 kb on + strand, within Ac3H11_3938 at 156.066 kb on - strand, within Ac3H11_3938 at 156.176 kb on + strand, within Ac3H11_3938 at 156.176 kb on + strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.582 kb on - strand at 156.602 kb on + strand at 156.603 kb on - strand at 156.906 kb on + strand at 156.906 kb on + strand at 156.907 kb on - strand at 156.907 kb on - strand at 157.188 kb on + strand, within Ac3H11_3939 at 157.251 kb on + strand, within Ac3H11_3939 at 157.252 kb on - strand, within Ac3H11_3939 at 157.252 kb on - strand, within Ac3H11_3939 at 157.278 kb on + strand, within Ac3H11_3939 at 157.337 kb on + strand, within Ac3H11_3939 at 157.337 kb on + strand, within Ac3H11_3939
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 155,074 + Ac3H11_3936 0.45 +0.6 155,074 + Ac3H11_3936 0.45 +0.4 155,075 - Ac3H11_3936 0.45 -0.7 155,707 - Ac3H11_3937 0.52 -0.4 155,964 + +0.2 155,964 + +0.1 155,964 + +0.5 155,964 + +0.1 155,965 - -0.1 155,965 - +0.2 155,965 - +0.2 155,965 - +0.5 155,965 - -0.3 155,965 - +0.1 155,965 - -0.8 156,035 + -0.3 156,035 + +0.1 156,035 + -1.3 156,036 - -0.5 156,065 + Ac3H11_3938 0.12 -0.1 156,065 + Ac3H11_3938 0.12 +0.0 156,065 + Ac3H11_3938 0.12 +0.6 156,066 - Ac3H11_3938 0.12 -0.1 156,176 + Ac3H11_3938 0.29 +0.3 156,176 + Ac3H11_3938 0.29 +0.0 156,177 - Ac3H11_3938 0.29 +0.0 156,177 - Ac3H11_3938 0.29 -0.2 156,177 - Ac3H11_3938 0.29 +0.6 156,582 - -0.5 156,602 + -0.0 156,603 - -0.1 156,906 + +2.9 156,906 + +0.0 156,907 - +0.1 156,907 - +1.9 157,188 + Ac3H11_3939 0.21 +0.5 157,251 + Ac3H11_3939 0.24 +1.1 157,252 - Ac3H11_3939 0.24 +0.3 157,252 - Ac3H11_3939 0.24 -0.2 157,278 + Ac3H11_3939 0.26 -0.3 157,337 + Ac3H11_3939 0.28 +1.4 157,337 + Ac3H11_3939 0.28 +1.6
Or see this region's nucleotide sequence