Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_342 and Ac3H11_343 are separated by 11 nucleotides Ac3H11_343 and Ac3H11_344 are separated by 88 nucleotides Ac3H11_344 and Ac3H11_345 are separated by 228 nucleotides Ac3H11_345 and Ac3H11_346 overlap by 4 nucleotides
Ac3H11_342 - Osmolarity sensory histidine kinase EnvZ, at 19,071 to 20,594
_342
Ac3H11_343 - Two-component system response regulator OmpR, at 20,606 to 21,337
_343
Ac3H11_344 - hypothetical protein, at 21,426 to 21,599
_344
Ac3H11_345 - hypothetical protein, at 21,828 to 22,223
_345
Ac3H11_346 - hypothetical protein, at 22,220 to 22,435
_346
Position (kb) 21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 21.428 kb on - strand at 21.810 kb on - strand at 22.033 kb on - strand, within Ac3H11_345 at 22.059 kb on + strand, within Ac3H11_345 at 22.060 kb on - strand, within Ac3H11_345 at 22.325 kb on + strand, within Ac3H11_346 at 22.326 kb on - strand, within Ac3H11_346 at 22.356 kb on - strand, within Ac3H11_346 at 22.356 kb on - strand, within Ac3H11_346 at 22.356 kb on - strand, within Ac3H11_346 at 22.520 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 20,591 - +0.5 20,591 - -0.3 20,591 - +1.4 20,591 - -0.5 20,591 - +0.6 20,591 - -0.4 20,591 - -1.2 20,591 - -1.3 20,591 - -0.2 20,591 - -0.2 21,428 - -0.1 21,810 - +1.4 22,033 - Ac3H11_345 0.52 -0.3 22,059 + Ac3H11_345 0.58 -2.2 22,060 - Ac3H11_345 0.59 +0.2 22,325 + Ac3H11_346 0.49 -1.2 22,326 - Ac3H11_346 0.49 +0.2 22,356 - Ac3H11_346 0.63 -0.9 22,356 - Ac3H11_346 0.63 -1.9 22,356 - Ac3H11_346 0.63 -0.2 22,520 - -0.4
Or see this region's nucleotide sequence