Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2210 and Ac3H11_2211 overlap by 9 nucleotides Ac3H11_2211 and Ac3H11_2212 overlap by 44 nucleotides Ac3H11_2212 and Ac3H11_2213 overlap by 4 nucleotides
Ac3H11_2210 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 440,264 to 444,100
_2210
Ac3H11_2211 - hypothetical protein, at 444,092 to 444,304
_2211
Ac3H11_2212 - Permease of the drug/metabolite transporter (DMT) superfamily, at 444,261 to 445,187
_2212
Ac3H11_2213 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 445,184 to 445,756
_2213
Position (kb) 444
445 Strain fitness (log2 ratio) -1
0
1 at 443.256 kb on + strand, within Ac3H11_2210 at 443.256 kb on + strand, within Ac3H11_2210 at 443.256 kb on + strand, within Ac3H11_2210 at 443.256 kb on + strand, within Ac3H11_2210 at 443.256 kb on + strand, within Ac3H11_2210 at 443.256 kb on + strand, within Ac3H11_2210 at 443.257 kb on - strand, within Ac3H11_2210 at 443.257 kb on - strand, within Ac3H11_2210 at 443.334 kb on + strand, within Ac3H11_2210 at 443.386 kb on - strand, within Ac3H11_2210 at 443.394 kb on + strand, within Ac3H11_2210 at 443.394 kb on + strand, within Ac3H11_2210 at 443.395 kb on - strand, within Ac3H11_2210 at 443.395 kb on - strand, within Ac3H11_2210 at 443.395 kb on - strand, within Ac3H11_2210 at 443.877 kb on + strand at 443.877 kb on + strand at 443.877 kb on + strand at 443.877 kb on + strand at 443.878 kb on - strand at 444.224 kb on - strand, within Ac3H11_2211 at 444.224 kb on - strand, within Ac3H11_2211 at 444.305 kb on + strand at 444.305 kb on + strand at 444.305 kb on + strand at 444.306 kb on - strand at 444.339 kb on + strand at 444.339 kb on + strand at 444.340 kb on - strand at 444.340 kb on - strand at 444.397 kb on + strand, within Ac3H11_2212 at 444.398 kb on - strand, within Ac3H11_2212 at 444.398 kb on - strand, within Ac3H11_2212 at 444.398 kb on - strand, within Ac3H11_2212 at 444.476 kb on - strand, within Ac3H11_2212 at 444.484 kb on + strand, within Ac3H11_2212 at 444.484 kb on + strand, within Ac3H11_2212 at 444.484 kb on + strand, within Ac3H11_2212 at 444.484 kb on + strand, within Ac3H11_2212 at 444.484 kb on + strand, within Ac3H11_2212 at 444.484 kb on + strand, within Ac3H11_2212 at 444.484 kb on + strand, within Ac3H11_2212 at 444.484 kb on + strand, within Ac3H11_2212 at 444.484 kb on + strand, within Ac3H11_2212 at 444.485 kb on - strand, within Ac3H11_2212 at 444.485 kb on - strand, within Ac3H11_2212 at 444.485 kb on - strand, within Ac3H11_2212 at 444.485 kb on - strand, within Ac3H11_2212 at 444.485 kb on - strand, within Ac3H11_2212 at 444.485 kb on - strand, within Ac3H11_2212 at 444.567 kb on + strand, within Ac3H11_2212 at 444.567 kb on + strand, within Ac3H11_2212 at 444.567 kb on + strand, within Ac3H11_2212 at 444.567 kb on + strand, within Ac3H11_2212 at 444.568 kb on - strand, within Ac3H11_2212 at 444.568 kb on - strand, within Ac3H11_2212 at 444.676 kb on + strand, within Ac3H11_2212 at 444.677 kb on - strand, within Ac3H11_2212 at 444.677 kb on - strand, within Ac3H11_2212 at 444.677 kb on - strand, within Ac3H11_2212 at 444.677 kb on - strand, within Ac3H11_2212 at 444.677 kb on - strand, within Ac3H11_2212 at 444.677 kb on - strand, within Ac3H11_2212 at 444.677 kb on - strand, within Ac3H11_2212 at 444.997 kb on + strand, within Ac3H11_2212 at 445.303 kb on - strand, within Ac3H11_2213
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 443,256 + Ac3H11_2210 0.78 +0.2 443,256 + Ac3H11_2210 0.78 -0.5 443,256 + Ac3H11_2210 0.78 +0.5 443,256 + Ac3H11_2210 0.78 +0.1 443,256 + Ac3H11_2210 0.78 +0.4 443,256 + Ac3H11_2210 0.78 -0.4 443,257 - Ac3H11_2210 0.78 +0.4 443,257 - Ac3H11_2210 0.78 +1.2 443,334 + Ac3H11_2210 0.80 -0.5 443,386 - Ac3H11_2210 0.81 +0.3 443,394 + Ac3H11_2210 0.82 +0.7 443,394 + Ac3H11_2210 0.82 +1.5 443,395 - Ac3H11_2210 0.82 +0.6 443,395 - Ac3H11_2210 0.82 +0.2 443,395 - Ac3H11_2210 0.82 +0.2 443,877 + -0.6 443,877 + +0.3 443,877 + -0.4 443,877 + -0.1 443,878 - -0.5 444,224 - Ac3H11_2211 0.62 +0.0 444,224 - Ac3H11_2211 0.62 +0.0 444,305 + +0.5 444,305 + -0.3 444,305 + +0.5 444,306 - -0.3 444,339 + +0.3 444,339 + -0.3 444,340 - -0.0 444,340 - +0.3 444,397 + Ac3H11_2212 0.15 +0.3 444,398 - Ac3H11_2212 0.15 +0.9 444,398 - Ac3H11_2212 0.15 +0.0 444,398 - Ac3H11_2212 0.15 -0.3 444,476 - Ac3H11_2212 0.23 -0.1 444,484 + Ac3H11_2212 0.24 +1.2 444,484 + Ac3H11_2212 0.24 -0.4 444,484 + Ac3H11_2212 0.24 -0.1 444,484 + Ac3H11_2212 0.24 -0.0 444,484 + Ac3H11_2212 0.24 +0.9 444,484 + Ac3H11_2212 0.24 -0.5 444,484 + Ac3H11_2212 0.24 -0.3 444,484 + Ac3H11_2212 0.24 +0.7 444,484 + Ac3H11_2212 0.24 -0.8 444,485 - Ac3H11_2212 0.24 +0.1 444,485 - Ac3H11_2212 0.24 +0.5 444,485 - Ac3H11_2212 0.24 +0.4 444,485 - Ac3H11_2212 0.24 -0.3 444,485 - Ac3H11_2212 0.24 -0.4 444,485 - Ac3H11_2212 0.24 -0.2 444,567 + Ac3H11_2212 0.33 -0.6 444,567 + Ac3H11_2212 0.33 +0.4 444,567 + Ac3H11_2212 0.33 +0.6 444,567 + Ac3H11_2212 0.33 -1.1 444,568 - Ac3H11_2212 0.33 +1.5 444,568 - Ac3H11_2212 0.33 +1.7 444,676 + Ac3H11_2212 0.45 +0.2 444,677 - Ac3H11_2212 0.45 -0.2 444,677 - Ac3H11_2212 0.45 +0.3 444,677 - Ac3H11_2212 0.45 +0.7 444,677 - Ac3H11_2212 0.45 -0.8 444,677 - Ac3H11_2212 0.45 +0.1 444,677 - Ac3H11_2212 0.45 -0.1 444,677 - Ac3H11_2212 0.45 -0.2 444,997 + Ac3H11_2212 0.79 +0.7 445,303 - Ac3H11_2213 0.21 -0.3
Or see this region's nucleotide sequence