Experiment: Furfuryl Alcohol 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26810 and AO353_26815 are separated by 316 nucleotides AO353_26815 and AO353_26820 overlap by 23 nucleotides AO353_26820 and AO353_26825 are separated by 135 nucleotides AO353_26825 and AO353_26830 are separated by 205 nucleotides
AO353_26810: AO353_26810 - (2Fe-2S)-binding protein, at 5,873,138 to 5,873,452
_26810
AO353_26815: AO353_26815 - transcriptional regulator, at 5,873,769 to 5,874,452
_26815
AO353_26820: AO353_26820 - histidine kinase, at 5,874,430 to 5,875,824
_26820
AO353_26825: AO353_26825 - bifunctional pyrazinamidase/nicotinamidase, at 5,875,960 to 5,876,598
_26825
AO353_26830: AO353_26830 - histidine kinase, at 5,876,804 to 5,878,105
_26830
Position (kb)
5874
5875
5876 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5873.434 kb on + strand at 5873.542 kb on + strand at 5873.542 kb on + strand at 5873.542 kb on + strand at 5873.542 kb on + strand at 5873.543 kb on - strand at 5873.543 kb on - strand at 5873.543 kb on - strand at 5873.556 kb on - strand at 5873.574 kb on + strand at 5873.580 kb on - strand at 5873.586 kb on + strand at 5873.681 kb on - strand at 5873.701 kb on + strand at 5873.702 kb on - strand at 5873.742 kb on + strand at 5873.743 kb on - strand at 5873.743 kb on - strand at 5873.743 kb on - strand at 5873.743 kb on - strand at 5873.751 kb on + strand at 5873.751 kb on + strand at 5873.751 kb on + strand at 5873.905 kb on - strand, within AO353_26815 at 5874.063 kb on + strand, within AO353_26815 at 5874.144 kb on + strand, within AO353_26815 at 5874.144 kb on + strand, within AO353_26815 at 5874.145 kb on - strand, within AO353_26815 at 5874.145 kb on - strand, within AO353_26815 at 5874.240 kb on + strand, within AO353_26815 at 5874.240 kb on + strand, within AO353_26815 at 5874.241 kb on - strand, within AO353_26815 at 5874.429 kb on + strand at 5874.450 kb on + strand at 5874.490 kb on + strand at 5874.491 kb on - strand at 5874.491 kb on - strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.538 kb on + strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.539 kb on - strand at 5874.541 kb on + strand at 5874.541 kb on + strand at 5874.541 kb on + strand at 5874.542 kb on - strand at 5874.542 kb on - strand at 5874.556 kb on + strand at 5874.557 kb on - strand at 5874.682 kb on + strand, within AO353_26820 at 5874.989 kb on + strand, within AO353_26820 at 5874.990 kb on - strand, within AO353_26820 at 5874.990 kb on - strand, within AO353_26820 at 5874.990 kb on - strand, within AO353_26820 at 5875.397 kb on - strand, within AO353_26820 at 5875.397 kb on - strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand at 5875.593 kb on + strand, within AO353_26820 at 5875.593 kb on + strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.594 kb on - strand, within AO353_26820 at 5875.601 kb on + strand, within AO353_26820 at 5875.602 kb on - strand, within AO353_26820 at 5875.602 kb on - strand, within AO353_26820 at 5875.661 kb on - strand, within AO353_26820 at 5875.822 kb on + strand at 5875.822 kb on + strand at 5875.822 kb on + strand at 5875.825 kb on + strand at 5875.826 kb on - strand at 5875.923 kb on + strand at 5875.923 kb on + strand at 5875.924 kb on - strand at 5875.924 kb on - strand at 5875.924 kb on - strand at 5875.994 kb on + strand at 5875.994 kb on + strand at 5875.994 kb on + strand at 5875.994 kb on + strand at 5875.995 kb on - strand at 5875.995 kb on - strand at 5875.995 kb on - strand at 5875.995 kb on - strand at 5875.995 kb on - strand at 5875.997 kb on + strand at 5875.998 kb on - strand at 5876.009 kb on + strand at 5876.009 kb on + strand at 5876.010 kb on - strand at 5876.176 kb on + strand, within AO353_26825 at 5876.176 kb on + strand at 5876.176 kb on + strand, within AO353_26825 at 5876.176 kb on + strand, within AO353_26825 at 5876.176 kb on + strand, within AO353_26825 at 5876.177 kb on - strand, within AO353_26825 at 5876.177 kb on - strand at 5876.307 kb on + strand, within AO353_26825 at 5876.326 kb on + strand, within AO353_26825 at 5876.326 kb on + strand, within AO353_26825 at 5876.326 kb on + strand, within AO353_26825 at 5876.327 kb on - strand at 5876.327 kb on - strand, within AO353_26825 at 5876.588 kb on + strand at 5876.663 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.691 kb on + strand at 5876.692 kb on - strand at 5876.692 kb on - strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.693 kb on + strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.694 kb on - strand at 5876.775 kb on - strand at 5876.790 kb on + strand at 5876.790 kb on + strand at 5876.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.0625 vol% remove 5,873,434 + +2.1 5,873,542 + -0.7 5,873,542 + +1.5 5,873,542 + -0.1 5,873,542 + +0.2 5,873,543 - +0.5 5,873,543 - -1.0 5,873,543 - +1.3 5,873,556 - +0.6 5,873,574 + +1.1 5,873,580 - -0.3 5,873,586 + -0.5 5,873,681 - -0.5 5,873,701 + -0.2 5,873,702 - +0.7 5,873,742 + -1.2 5,873,743 - -0.7 5,873,743 - +0.6 5,873,743 - +0.0 5,873,743 - -2.3 5,873,751 + +0.7 5,873,751 + -0.3 5,873,751 + -0.5 5,873,905 - AO353_26815 0.20 -0.6 5,874,063 + AO353_26815 0.43 -1.5 5,874,144 + AO353_26815 0.55 -0.3 5,874,144 + AO353_26815 0.55 -0.8 5,874,145 - AO353_26815 0.55 +0.9 5,874,145 - AO353_26815 0.55 +0.9 5,874,240 + AO353_26815 0.69 -0.1 5,874,240 + AO353_26815 0.69 -1.1 5,874,241 - AO353_26815 0.69 +0.1 5,874,429 + -0.2 5,874,450 + +0.5 5,874,490 + +0.5 5,874,491 - +0.9 5,874,491 - +0.6 5,874,538 + -1.5 5,874,538 + +1.3 5,874,538 + -0.5 5,874,538 + -0.4 5,874,538 + -0.0 5,874,538 + -2.5 5,874,538 + +1.0 5,874,538 + +0.6 5,874,538 + -0.8 5,874,538 + -0.1 5,874,539 - -1.5 5,874,539 - +2.1 5,874,539 - +0.5 5,874,539 - +0.6 5,874,539 - +0.9 5,874,539 - -0.7 5,874,539 - +0.7 5,874,539 - +2.5 5,874,539 - +0.8 5,874,539 - +0.5 5,874,539 - +1.1 5,874,539 - +1.1 5,874,539 - -1.8 5,874,541 + -1.1 5,874,541 + +0.3 5,874,541 + -0.5 5,874,542 - -1.1 5,874,542 - -0.7 5,874,556 + -0.3 5,874,557 - -0.1 5,874,682 + AO353_26820 0.18 -0.2 5,874,989 + AO353_26820 0.40 -0.5 5,874,990 - AO353_26820 0.40 +0.5 5,874,990 - AO353_26820 0.40 -0.3 5,874,990 - AO353_26820 0.40 -1.1 5,875,397 - AO353_26820 0.69 +1.1 5,875,397 - AO353_26820 0.69 -0.5 5,875,593 + AO353_26820 0.83 -0.8 5,875,593 + AO353_26820 0.83 -0.8 5,875,593 + AO353_26820 0.83 +1.7 5,875,593 + AO353_26820 0.83 +0.5 5,875,593 + AO353_26820 0.83 -1.1 5,875,593 + -1.1 5,875,593 + AO353_26820 0.83 -0.1 5,875,593 + AO353_26820 0.83 -1.6 5,875,594 - AO353_26820 0.83 +0.2 5,875,594 - AO353_26820 0.83 -1.1 5,875,594 - AO353_26820 0.83 -0.5 5,875,594 - AO353_26820 0.83 +0.3 5,875,594 - AO353_26820 0.83 -0.4 5,875,601 + AO353_26820 0.84 -1.0 5,875,602 - AO353_26820 0.84 -0.5 5,875,602 - AO353_26820 0.84 -0.8 5,875,661 - AO353_26820 0.88 -1.3 5,875,822 + -1.6 5,875,822 + -1.4 5,875,822 + +0.5 5,875,825 + -0.2 5,875,826 - -0.8 5,875,923 + +0.5 5,875,923 + -0.7 5,875,924 - +0.1 5,875,924 - +0.7 5,875,924 - -0.8 5,875,994 + -0.1 5,875,994 + -0.1 5,875,994 + -2.0 5,875,994 + +0.5 5,875,995 - -1.7 5,875,995 - -0.4 5,875,995 - +0.5 5,875,995 - +1.2 5,875,995 - -0.1 5,875,997 + +3.3 5,875,998 - +1.2 5,876,009 + +1.0 5,876,009 + +1.2 5,876,010 - +1.1 5,876,176 + AO353_26825 0.34 -0.5 5,876,176 + +0.5 5,876,176 + AO353_26825 0.34 -0.5 5,876,176 + AO353_26825 0.34 -0.8 5,876,176 + AO353_26825 0.34 +0.5 5,876,177 - AO353_26825 0.34 -0.5 5,876,177 - -0.5 5,876,307 + AO353_26825 0.54 +0.8 5,876,326 + AO353_26825 0.57 +0.1 5,876,326 + AO353_26825 0.57 +0.5 5,876,326 + AO353_26825 0.57 +0.4 5,876,327 - -1.1 5,876,327 - AO353_26825 0.57 -0.2 5,876,588 + +1.3 5,876,663 + -0.0 5,876,691 + -1.8 5,876,691 + +0.5 5,876,691 + +0.5 5,876,691 + -0.1 5,876,691 + -2.3 5,876,691 + -0.3 5,876,691 + -0.7 5,876,692 - -2.7 5,876,692 - +0.2 5,876,693 + -1.3 5,876,693 + +0.2 5,876,693 + -1.3 5,876,693 + -0.2 5,876,693 + +0.5 5,876,693 + +0.3 5,876,693 + +0.5 5,876,693 + -0.1 5,876,693 + -0.5 5,876,693 + -0.8 5,876,694 - +0.1 5,876,694 - -0.5 5,876,694 - +0.1 5,876,694 - +1.4 5,876,694 - -0.5 5,876,694 - +3.1 5,876,694 - +0.3 5,876,694 - +0.5 5,876,694 - +0.2 5,876,694 - +0.0 5,876,775 - -2.3 5,876,790 + -0.4 5,876,790 + -0.8 5,876,791 - -0.7
Or see this region's nucleotide sequence