Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21690

Experiment: Furfuryl Alcohol 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21680 and AO353_21685 are separated by 2 nucleotidesAO353_21685 and AO353_21690 are separated by 56 nucleotidesAO353_21690 and AO353_21695 are separated by 77 nucleotidesAO353_21695 and AO353_21700 are separated by 77 nucleotides AO353_21680: AO353_21680 - hypothetical protein, at 4,754,914 to 4,756,473 _21680 AO353_21685: AO353_21685 - hypothetical protein, at 4,756,476 to 4,757,201 _21685 AO353_21690: AO353_21690 - 2,4-dienoyl-CoA reductase, at 4,757,258 to 4,758,481 _21690 AO353_21695: AO353_21695 - MerR family transcriptional regulator, at 4,758,559 to 4,758,966 _21695 AO353_21700: AO353_21700 - thioredoxin, at 4,759,044 to 4,759,466 _21700 Position (kb) 4757 4758 4759Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4756.485 kb on + strandat 4756.485 kb on + strandat 4756.485 kb on + strandat 4756.485 kb on + strandat 4756.485 kb on + strandat 4756.486 kb on - strandat 4756.486 kb on - strandat 4756.486 kb on - strandat 4756.486 kb on - strandat 4756.583 kb on + strand, within AO353_21685at 4756.620 kb on + strand, within AO353_21685at 4756.620 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.743 kb on + strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.744 kb on - strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strand, within AO353_21685at 4756.747 kb on + strandat 4756.747 kb on + strand, within AO353_21685at 4756.748 kb on + strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.748 kb on - strand, within AO353_21685at 4756.852 kb on + strand, within AO353_21685at 4756.904 kb on + strand, within AO353_21685at 4756.905 kb on - strand, within AO353_21685at 4757.006 kb on + strand, within AO353_21685at 4757.007 kb on - strand, within AO353_21685at 4757.007 kb on - strand, within AO353_21685at 4757.025 kb on + strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.026 kb on - strand, within AO353_21685at 4757.227 kb on + strandat 4757.228 kb on - strandat 4757.246 kb on + strandat 4757.246 kb on + strandat 4757.247 kb on - strandat 4757.260 kb on - strandat 4757.304 kb on + strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.305 kb on - strandat 4757.643 kb on + strand, within AO353_21690at 4757.643 kb on + strand, within AO353_21690at 4757.644 kb on - strand, within AO353_21690at 4757.644 kb on - strand, within AO353_21690at 4757.644 kb on - strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.703 kb on + strand, within AO353_21690at 4757.704 kb on - strand, within AO353_21690at 4757.704 kb on - strand, within AO353_21690at 4757.961 kb on + strand, within AO353_21690at 4757.962 kb on - strand, within AO353_21690at 4757.962 kb on - strand, within AO353_21690at 4758.266 kb on + strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.267 kb on - strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.305 kb on + strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.306 kb on - strand, within AO353_21690at 4758.496 kb on + strandat 4758.497 kb on - strandat 4758.513 kb on + strandat 4758.519 kb on + strandat 4758.617 kb on - strand, within AO353_21695at 4759.191 kb on - strand, within AO353_21700at 4759.231 kb on + strand, within AO353_21700at 4759.231 kb on + strand, within AO353_21700at 4759.231 kb on + strand, within AO353_21700at 4759.286 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.297 kb on + strand, within AO353_21700at 4759.298 kb on - strand, within AO353_21700at 4759.298 kb on - strand, within AO353_21700at 4759.298 kb on - strand, within AO353_21700at 4759.316 kb on + strand, within AO353_21700at 4759.317 kb on - strand, within AO353_21700at 4759.318 kb on + strand, within AO353_21700at 4759.318 kb on + strand, within AO353_21700at 4759.319 kb on - strand, within AO353_21700at 4759.319 kb on - strand, within AO353_21700at 4759.319 kb on - strand, within AO353_21700at 4759.342 kb on - strand, within AO353_21700at 4759.366 kb on + strand, within AO353_21700at 4759.366 kb on + strand, within AO353_21700at 4759.388 kb on - strand, within AO353_21700at 4759.388 kb on - strand, within AO353_21700at 4759.388 kb on - strand, within AO353_21700at 4759.406 kb on - strand, within AO353_21700at 4759.471 kb on + strandat 4759.472 kb on - strandat 4759.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.0625 vol%
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4,756,485 + -1.0
4,756,485 + +0.3
4,756,485 + -0.4
4,756,485 + -0.0
4,756,485 + -0.4
4,756,486 - +0.2
4,756,486 - -1.2
4,756,486 - -0.9
4,756,486 - +2.1
4,756,583 + AO353_21685 0.15 +1.1
4,756,620 + AO353_21685 0.20 +1.1
4,756,620 + AO353_21685 0.20 -0.0
4,756,743 + AO353_21685 0.37 +1.4
4,756,743 + AO353_21685 0.37 +0.3
4,756,743 + AO353_21685 0.37 -0.0
4,756,743 + AO353_21685 0.37 -0.0
4,756,743 + AO353_21685 0.37 +0.6
4,756,743 + AO353_21685 0.37 +0.1
4,756,743 + AO353_21685 0.37 +0.1
4,756,743 + AO353_21685 0.37 -0.0
4,756,743 + AO353_21685 0.37 +1.7
4,756,743 + AO353_21685 0.37 -0.6
4,756,743 + AO353_21685 0.37 +0.3
4,756,743 + AO353_21685 0.37 +0.7
4,756,744 - AO353_21685 0.37 +1.0
4,756,744 - AO353_21685 0.37 -2.4
4,756,744 - AO353_21685 0.37 +1.3
4,756,744 - AO353_21685 0.37 +1.6
4,756,744 - AO353_21685 0.37 +0.1
4,756,744 - AO353_21685 0.37 -0.9
4,756,744 - AO353_21685 0.37 -0.2
4,756,744 - AO353_21685 0.37 +0.3
4,756,744 - AO353_21685 0.37 -0.0
4,756,744 - AO353_21685 0.37 +0.1
4,756,744 - AO353_21685 0.37 +0.3
4,756,744 - AO353_21685 0.37 +1.0
4,756,744 - AO353_21685 0.37 +1.6
4,756,744 - AO353_21685 0.37 -0.7
4,756,744 - AO353_21685 0.37 +0.6
4,756,744 - AO353_21685 0.37 +0.1
4,756,744 - AO353_21685 0.37 -0.9
4,756,744 - AO353_21685 0.37 -0.1
4,756,744 - AO353_21685 0.37 -0.3
4,756,744 - AO353_21685 0.37 +0.6
4,756,744 - AO353_21685 0.37 -0.4
4,756,744 - AO353_21685 0.37 +0.1
4,756,744 - AO353_21685 0.37 -0.3
4,756,744 - AO353_21685 0.37 -0.0
4,756,744 - AO353_21685 0.37 -1.0
4,756,744 - AO353_21685 0.37 +0.0
4,756,744 - AO353_21685 0.37 +0.3
4,756,744 - AO353_21685 0.37 +0.6
4,756,747 + AO353_21685 0.37 +0.6
4,756,747 + AO353_21685 0.37 -0.9
4,756,747 + AO353_21685 0.37 +0.1
4,756,747 + AO353_21685 0.37 +1.9
4,756,747 + AO353_21685 0.37 -0.4
4,756,747 + +0.6
4,756,747 + AO353_21685 0.37 -0.9
4,756,748 + AO353_21685 0.37 +0.0
4,756,748 - AO353_21685 0.37 -0.4
4,756,748 - AO353_21685 0.37 +0.6
4,756,748 - AO353_21685 0.37 -0.7
4,756,748 - AO353_21685 0.37 -1.5
4,756,748 - AO353_21685 0.37 -0.0
4,756,748 - AO353_21685 0.37 +0.8
4,756,852 + AO353_21685 0.52 -0.2
4,756,904 + AO353_21685 0.59 +1.1
4,756,905 - AO353_21685 0.59 -0.0
4,757,006 + AO353_21685 0.73 -0.8
4,757,007 - AO353_21685 0.73 +0.2
4,757,007 - AO353_21685 0.73 -0.4
4,757,025 + AO353_21685 0.76 -0.9
4,757,026 - AO353_21685 0.76 +0.3
4,757,026 - AO353_21685 0.76 -0.7
4,757,026 - AO353_21685 0.76 +1.6
4,757,026 - AO353_21685 0.76 +0.4
4,757,026 - AO353_21685 0.76 +2.6
4,757,026 - AO353_21685 0.76 -0.6
4,757,227 + -0.5
4,757,228 - -0.9
4,757,246 + +0.1
4,757,246 + -0.2
4,757,247 - +0.9
4,757,260 - -0.0
4,757,304 + +0.3
4,757,305 - +0.1
4,757,305 - +0.1
4,757,305 - -0.6
4,757,305 - -0.7
4,757,305 - +0.7
4,757,305 - +0.3
4,757,305 - +1.6
4,757,305 - -1.3
4,757,305 - -0.1
4,757,305 - -0.1
4,757,305 - -0.2
4,757,643 + AO353_21690 0.31 -1.3
4,757,643 + AO353_21690 0.31 -0.1
4,757,644 - AO353_21690 0.32 -0.1
4,757,644 - AO353_21690 0.32 -1.8
4,757,644 - AO353_21690 0.32 -1.4
4,757,703 + AO353_21690 0.36 -0.5
4,757,703 + AO353_21690 0.36 -0.7
4,757,703 + AO353_21690 0.36 -2.0
4,757,703 + AO353_21690 0.36 -0.5
4,757,703 + AO353_21690 0.36 -0.6
4,757,703 + AO353_21690 0.36 -0.4
4,757,703 + AO353_21690 0.36 +0.4
4,757,703 + AO353_21690 0.36 +1.7
4,757,704 - AO353_21690 0.36 -0.8
4,757,704 - AO353_21690 0.36 +0.8
4,757,961 + AO353_21690 0.57 -0.7
4,757,962 - AO353_21690 0.58 -0.2
4,757,962 - AO353_21690 0.58 -0.0
4,758,266 + AO353_21690 0.82 -2.3
4,758,267 - AO353_21690 0.82 +0.1
4,758,267 - AO353_21690 0.82 -1.4
4,758,267 - AO353_21690 0.82 -1.0
4,758,267 - AO353_21690 0.82 -2.0
4,758,267 - AO353_21690 0.82 -1.4
4,758,267 - AO353_21690 0.82 -0.9
4,758,305 + AO353_21690 0.86 +1.0
4,758,305 + AO353_21690 0.86 -0.4
4,758,305 + AO353_21690 0.86 +0.6
4,758,305 + AO353_21690 0.86 -1.0
4,758,305 + AO353_21690 0.86 +1.6
4,758,306 - AO353_21690 0.86 +1.0
4,758,306 - AO353_21690 0.86 +0.6
4,758,306 - AO353_21690 0.86 -0.0
4,758,306 - AO353_21690 0.86 +2.9
4,758,306 - AO353_21690 0.86 -0.4
4,758,496 + -0.6
4,758,497 - -0.4
4,758,513 + -0.7
4,758,519 + -1.8
4,758,617 - AO353_21695 0.14 +0.7
4,759,191 - AO353_21700 0.35 +2.1
4,759,231 + AO353_21700 0.44 +1.3
4,759,231 + AO353_21700 0.44 +0.6
4,759,231 + AO353_21700 0.44 +0.6
4,759,286 + AO353_21700 0.57 +0.8
4,759,297 + AO353_21700 0.60 -0.0
4,759,297 + AO353_21700 0.60 +1.6
4,759,297 + AO353_21700 0.60 +0.6
4,759,297 + AO353_21700 0.60 -2.8
4,759,297 + AO353_21700 0.60 +0.9
4,759,298 - AO353_21700 0.60 +0.6
4,759,298 - AO353_21700 0.60 -0.6
4,759,298 - AO353_21700 0.60 +1.0
4,759,316 + AO353_21700 0.64 +0.6
4,759,317 - AO353_21700 0.65 +1.0
4,759,318 + AO353_21700 0.65 +0.6
4,759,318 + AO353_21700 0.65 -0.0
4,759,319 - AO353_21700 0.65 +0.8
4,759,319 - AO353_21700 0.65 -0.1
4,759,319 - AO353_21700 0.65 -1.4
4,759,342 - AO353_21700 0.70 -0.0
4,759,366 + AO353_21700 0.76 -1.0
4,759,366 + AO353_21700 0.76 +0.1
4,759,388 - AO353_21700 0.81 +0.6
4,759,388 - AO353_21700 0.81 -0.4
4,759,388 - AO353_21700 0.81 +0.4
4,759,406 - AO353_21700 0.86 +1.0
4,759,471 + -0.4
4,759,472 - +0.2
4,759,472 - -0.2

Or see this region's nucleotide sequence