Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00525

Experiment: Furfuryl Alcohol 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00515 and AO353_00520 are separated by 104 nucleotidesAO353_00520 and AO353_00525 are separated by 179 nucleotidesAO353_00525 and AO353_00530 are separated by 213 nucleotides AO353_00515: AO353_00515 - hypothetical protein, at 105,791 to 106,228 _00515 AO353_00520: AO353_00520 - universal stress protein UspA, at 106,333 to 106,770 _00520 AO353_00525: AO353_00525 - ABC transporter ATP-binding protein, at 106,950 to 108,866 _00525 AO353_00530: AO353_00530 - lytic transglycosylase, at 109,080 to 111,008 _00530 Position (kb) 106 107 108 109Strain fitness (log2 ratio) -2 -1 0 1 2at 105.994 kb on - strandat 106.157 kb on - strand, within AO353_00515at 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.228 kb on + strandat 106.229 kb on - strandat 106.229 kb on - strandat 106.235 kb on - strandat 106.235 kb on - strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.296 kb on + strandat 106.297 kb on - strandat 106.297 kb on - strandat 106.297 kb on - strandat 106.297 kb on - strandat 106.300 kb on + strandat 106.300 kb on + strandat 106.300 kb on + strandat 106.347 kb on + strandat 106.347 kb on + strandat 106.347 kb on + strandat 106.347 kb on + strandat 106.347 kb on + strandat 106.348 kb on - strandat 106.348 kb on - strandat 106.348 kb on - strandat 106.348 kb on - strandat 106.348 kb on - strandat 106.361 kb on + strandat 106.361 kb on + strandat 106.368 kb on - strandat 106.368 kb on - strandat 106.368 kb on - strandat 106.446 kb on + strand, within AO353_00520at 106.447 kb on - strand, within AO353_00520at 106.447 kb on - strand, within AO353_00520at 106.447 kb on - strand, within AO353_00520at 106.447 kb on - strand, within AO353_00520at 106.561 kb on + strand, within AO353_00520at 106.561 kb on + strand, within AO353_00520at 106.561 kb on + strand, within AO353_00520at 106.582 kb on + strand, within AO353_00520at 106.583 kb on - strand, within AO353_00520at 106.598 kb on - strand, within AO353_00520at 106.626 kb on + strand, within AO353_00520at 106.626 kb on + strand, within AO353_00520at 106.626 kb on + strand, within AO353_00520at 106.626 kb on + strand, within AO353_00520at 106.627 kb on - strand, within AO353_00520at 106.627 kb on - strand, within AO353_00520at 106.627 kb on - strand, within AO353_00520at 106.772 kb on + strandat 106.772 kb on + strandat 106.772 kb on + strandat 106.772 kb on + strandat 106.772 kb on + strandat 106.772 kb on + strandat 106.773 kb on - strandat 106.773 kb on - strandat 106.773 kb on - strandat 106.795 kb on + strandat 106.795 kb on + strandat 106.795 kb on + strandat 106.795 kb on + strandat 106.795 kb on + strandat 106.796 kb on - strandat 106.796 kb on - strandat 106.796 kb on - strandat 106.796 kb on - strandat 106.826 kb on + strandat 106.827 kb on - strandat 106.827 kb on - strandat 106.880 kb on + strandat 106.880 kb on + strandat 106.880 kb on + strandat 106.881 kb on - strandat 106.916 kb on + strandat 106.916 kb on + strandat 106.917 kb on - strandat 106.983 kb on + strandat 106.984 kb on - strandat 106.984 kb on - strandat 107.053 kb on + strandat 107.053 kb on + strandat 107.053 kb on + strandat 107.054 kb on - strandat 107.054 kb on - strandat 107.054 kb on - strandat 107.054 kb on - strandat 107.152 kb on + strand, within AO353_00525at 107.152 kb on + strand, within AO353_00525at 107.152 kb on + strand, within AO353_00525at 107.152 kb on + strand, within AO353_00525at 107.152 kb on + strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.153 kb on - strand, within AO353_00525at 107.317 kb on + strand, within AO353_00525at 107.317 kb on + strand, within AO353_00525at 107.317 kb on + strand, within AO353_00525at 107.484 kb on + strand, within AO353_00525at 107.485 kb on - strand, within AO353_00525at 107.613 kb on + strand, within AO353_00525at 107.613 kb on + strand, within AO353_00525at 107.613 kb on + strand, within AO353_00525at 107.614 kb on - strand, within AO353_00525at 107.614 kb on - strand, within AO353_00525at 107.614 kb on - strand, within AO353_00525at 107.614 kb on - strand, within AO353_00525at 107.716 kb on + strand, within AO353_00525at 107.716 kb on + strand, within AO353_00525at 107.957 kb on + strand, within AO353_00525at 107.958 kb on - strand, within AO353_00525at 107.958 kb on - strand, within AO353_00525at 108.249 kb on - strand, within AO353_00525at 108.565 kb on + strand, within AO353_00525at 108.565 kb on + strand, within AO353_00525at 108.566 kb on - strand, within AO353_00525at 108.566 kb on - strand, within AO353_00525at 108.654 kb on + strand, within AO353_00525at 108.822 kb on - strandat 108.822 kb on - strandat 108.896 kb on + strandat 108.897 kb on - strandat 108.897 kb on - strandat 108.970 kb on + strandat 109.014 kb on + strandat 109.015 kb on - strandat 109.019 kb on + strandat 109.019 kb on + strandat 109.020 kb on - strandat 109.020 kb on - strandat 109.021 kb on + strandat 109.021 kb on + strandat 109.022 kb on - strandat 109.022 kb on - strandat 109.022 kb on - strandat 109.022 kb on - strandat 109.026 kb on - strandat 109.176 kb on + strandat 109.176 kb on + strandat 109.177 kb on - strandat 109.179 kb on + strandat 109.179 kb on + strandat 109.179 kb on + strandat 109.180 kb on - strandat 109.180 kb on - strandat 109.225 kb on - strandat 109.270 kb on - strandat 109.431 kb on + strand, within AO353_00530at 109.431 kb on + strand, within AO353_00530at 109.431 kb on + strand, within AO353_00530at 109.431 kb on + strand, within AO353_00530at 109.432 kb on - strand, within AO353_00530at 109.432 kb on - strand, within AO353_00530at 109.432 kb on - strand, within AO353_00530at 109.432 kb on - strand, within AO353_00530at 109.434 kb on + strand, within AO353_00530at 109.434 kb on + strand, within AO353_00530at 109.482 kb on + strand, within AO353_00530at 109.482 kb on + strand, within AO353_00530at 109.483 kb on - strand, within AO353_00530at 109.483 kb on - strand, within AO353_00530at 109.516 kb on - strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.659 kb on + strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.660 kb on - strand, within AO353_00530at 109.717 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530at 109.866 kb on + strand, within AO353_00530

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.0625 vol%
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105,994 - -0.3
106,157 - AO353_00515 0.84 +1.7
106,228 + +0.4
106,228 + -1.7
106,228 + +1.1
106,228 + +0.7
106,228 + +0.7
106,228 + +0.8
106,228 + -0.3
106,229 - +0.7
106,229 - -1.2
106,235 - -0.9
106,235 - -1.8
106,296 + +1.5
106,296 + -0.2
106,296 + +0.1
106,296 + +0.2
106,296 + +0.4
106,296 + +0.4
106,296 + +0.1
106,296 + +0.2
106,296 + -0.7
106,297 - -0.3
106,297 - -0.3
106,297 - +0.3
106,297 - -0.7
106,300 + +1.3
106,300 + -0.7
106,300 + -0.2
106,347 + +1.0
106,347 + -1.9
106,347 + +2.0
106,347 + -0.7
106,347 + -0.3
106,348 - +0.7
106,348 - +0.3
106,348 - -0.2
106,348 - -0.2
106,348 - -0.3
106,361 + +1.8
106,361 + -0.6
106,368 - -0.7
106,368 - -0.7
106,368 - -0.2
106,446 + AO353_00520 0.26 -0.3
106,447 - AO353_00520 0.26 +0.7
106,447 - AO353_00520 0.26 +0.1
106,447 - AO353_00520 0.26 +0.1
106,447 - AO353_00520 0.26 +0.7
106,561 + AO353_00520 0.52 +0.7
106,561 + AO353_00520 0.52 +0.4
106,561 + AO353_00520 0.52 +1.2
106,582 + AO353_00520 0.57 -0.3
106,583 - AO353_00520 0.57 -1.7
106,598 - AO353_00520 0.61 -0.3
106,626 + AO353_00520 0.67 +0.4
106,626 + AO353_00520 0.67 +1.4
106,626 + AO353_00520 0.67 -0.7
106,626 + AO353_00520 0.67 +0.8
106,627 - AO353_00520 0.67 -0.3
106,627 - AO353_00520 0.67 -1.7
106,627 - AO353_00520 0.67 +0.0
106,772 + +0.4
106,772 + -1.6
106,772 + +0.7
106,772 + +1.1
106,772 + -1.9
106,772 + -0.9
106,773 - +0.4
106,773 - +1.7
106,773 - -0.6
106,795 + -1.5
106,795 + -1.7
106,795 + +0.7
106,795 + +0.2
106,795 + -0.1
106,796 - +0.6
106,796 - -0.1
106,796 - -1.3
106,796 - +0.2
106,826 + +0.0
106,827 - +1.2
106,827 - -1.7
106,880 + -0.3
106,880 + -0.3
106,880 + -0.7
106,881 - +1.1
106,916 + -0.2
106,916 + +0.7
106,917 - -1.7
106,983 + -0.5
106,984 - +0.1
106,984 - -0.0
107,053 + +0.7
107,053 + -0.8
107,053 + -0.6
107,054 - +0.7
107,054 - +1.0
107,054 - -0.3
107,054 - +2.2
107,152 + AO353_00525 0.11 -0.1
107,152 + AO353_00525 0.11 +0.7
107,152 + AO353_00525 0.11 -0.5
107,152 + AO353_00525 0.11 +0.3
107,152 + AO353_00525 0.11 -1.1
107,153 - AO353_00525 0.11 -0.6
107,153 - AO353_00525 0.11 -0.1
107,153 - AO353_00525 0.11 -0.5
107,153 - AO353_00525 0.11 -0.3
107,153 - AO353_00525 0.11 -0.9
107,153 - AO353_00525 0.11 -1.3
107,153 - AO353_00525 0.11 -0.2
107,317 + AO353_00525 0.19 -0.6
107,317 + AO353_00525 0.19 -0.1
107,317 + AO353_00525 0.19 -0.9
107,484 + AO353_00525 0.28 +0.4
107,485 - AO353_00525 0.28 -1.3
107,613 + AO353_00525 0.35 +0.2
107,613 + AO353_00525 0.35 -1.0
107,613 + AO353_00525 0.35 +0.5
107,614 - AO353_00525 0.35 -1.3
107,614 - AO353_00525 0.35 -1.7
107,614 - AO353_00525 0.35 -0.9
107,614 - AO353_00525 0.35 +0.8
107,716 + AO353_00525 0.40 +1.7
107,716 + AO353_00525 0.40 +1.0
107,957 + AO353_00525 0.53 +0.3
107,958 - AO353_00525 0.53 -0.2
107,958 - AO353_00525 0.53 -0.3
108,249 - AO353_00525 0.68 +2.0
108,565 + AO353_00525 0.84 -1.5
108,565 + AO353_00525 0.84 -2.3
108,566 - AO353_00525 0.84 -1.3
108,566 - AO353_00525 0.84 -0.7
108,654 + AO353_00525 0.89 +1.2
108,822 - +1.1
108,822 - +1.8
108,896 + -0.8
108,897 - +1.7
108,897 - +0.2
108,970 + -0.3
109,014 + -0.4
109,015 - +0.1
109,019 + -0.1
109,019 + -1.2
109,020 - +0.1
109,020 - +0.7
109,021 + -2.7
109,021 + +0.9
109,022 - -0.5
109,022 - -0.6
109,022 - -0.3
109,022 - +1.3
109,026 - +0.0
109,176 + -0.2
109,176 + -0.8
109,177 - +1.5
109,179 + -0.9
109,179 + +0.4
109,179 + +0.7
109,180 - -0.3
109,180 - +0.6
109,225 - +0.3
109,270 - -1.1
109,431 + AO353_00530 0.18 -0.9
109,431 + AO353_00530 0.18 +0.9
109,431 + AO353_00530 0.18 -0.2
109,431 + AO353_00530 0.18 +0.5
109,432 - AO353_00530 0.18 -0.7
109,432 - AO353_00530 0.18 -0.3
109,432 - AO353_00530 0.18 +0.2
109,432 - AO353_00530 0.18 -1.9
109,434 + AO353_00530 0.18 +0.0
109,434 + AO353_00530 0.18 +0.7
109,482 + AO353_00530 0.21 -0.8
109,482 + AO353_00530 0.21 +0.7
109,483 - AO353_00530 0.21 +0.3
109,483 - AO353_00530 0.21 +1.7
109,516 - AO353_00530 0.23 -0.8
109,659 + AO353_00530 0.30 +1.1
109,659 + AO353_00530 0.30 +0.8
109,659 + AO353_00530 0.30 +1.2
109,659 + AO353_00530 0.30 -0.2
109,659 + AO353_00530 0.30 +1.1
109,659 + AO353_00530 0.30 +0.3
109,659 + AO353_00530 0.30 +0.9
109,659 + AO353_00530 0.30 -0.3
109,659 + AO353_00530 0.30 -1.9
109,660 - AO353_00530 0.30 -0.7
109,660 - AO353_00530 0.30 +1.2
109,660 - AO353_00530 0.30 -1.5
109,660 - AO353_00530 0.30 +0.0
109,660 - AO353_00530 0.30 +0.9
109,660 - AO353_00530 0.30 -0.0
109,660 - AO353_00530 0.30 -1.3
109,717 + AO353_00530 0.33 -0.3
109,866 + AO353_00530 0.41 -0.2
109,866 + AO353_00530 0.41 -1.5
109,866 + AO353_00530 0.41 +0.2
109,866 + AO353_00530 0.41 +1.7
109,866 + AO353_00530 0.41 -1.3
109,866 + AO353_00530 0.41 +1.2
109,866 + AO353_00530 0.41 -1.2
109,866 + AO353_00530 0.41 +2.1
109,866 + AO353_00530 0.41 -1.9

Or see this region's nucleotide sequence