Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000419 and ABIE53_000420 overlap by 4 nucleotides ABIE53_000420 and ABIE53_000421 are separated by 95 nucleotides ABIE53_000421 and ABIE53_000422 are separated by 9 nucleotides ABIE53_000422 and ABIE53_000423 are separated by 263 nucleotides
ABIE53_000419: ABIE53_000419 - two-component system sensor histidine kinase RegB, at 453,884 to 455,194
_000419
ABIE53_000420: ABIE53_000420 - two-component system response regulator RegA, at 455,191 to 455,733
_000420
ABIE53_000421: ABIE53_000421 - ATP-dependent HslUV protease ATP-binding subunit HslU, at 455,829 to 457,175
_000421
ABIE53_000422: ABIE53_000422 - ATP-dependent HslUV protease subunit HslV, at 457,185 to 457,721
_000422
ABIE53_000423: ABIE53_000423 - DnaK suppressor protein, at 457,985 to 458,404
_000423
Position (kb) 455
456
457
458 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 455.021 kb on + strand, within ABIE53_000419 at 455.731 kb on + strand at 455.731 kb on + strand at 455.731 kb on + strand at 455.731 kb on + strand at 455.731 kb on + strand at 455.731 kb on + strand at 455.731 kb on + strand at 455.731 kb on + strand at 455.732 kb on - strand at 455.732 kb on - strand at 455.732 kb on - strand at 455.732 kb on - strand at 455.732 kb on - strand at 455.732 kb on - strand at 455.732 kb on - strand at 455.825 kb on + strand at 455.825 kb on + strand at 455.825 kb on + strand at 455.825 kb on + strand at 455.826 kb on - strand at 455.839 kb on + strand at 455.840 kb on - strand at 455.890 kb on + strand at 455.890 kb on + strand at 455.890 kb on + strand at 455.891 kb on - strand at 455.891 kb on - strand at 455.891 kb on - strand at 455.891 kb on - strand at 455.891 kb on - strand at 455.891 kb on - strand at 455.975 kb on - strand, within ABIE53_000421 at 455.975 kb on - strand, within ABIE53_000421 at 456.087 kb on + strand, within ABIE53_000421 at 456.087 kb on + strand, within ABIE53_000421 at 456.088 kb on - strand, within ABIE53_000421 at 456.088 kb on - strand, within ABIE53_000421 at 456.097 kb on + strand, within ABIE53_000421 at 456.098 kb on - strand, within ABIE53_000421 at 456.098 kb on - strand, within ABIE53_000421 at 456.279 kb on + strand, within ABIE53_000421 at 456.280 kb on + strand, within ABIE53_000421 at 456.280 kb on + strand, within ABIE53_000421 at 456.280 kb on + strand, within ABIE53_000421 at 456.280 kb on + strand, within ABIE53_000421 at 456.280 kb on + strand, within ABIE53_000421 at 456.281 kb on - strand, within ABIE53_000421 at 456.281 kb on - strand, within ABIE53_000421 at 456.646 kb on + strand, within ABIE53_000421 at 456.904 kb on + strand, within ABIE53_000421 at 456.905 kb on - strand, within ABIE53_000421 at 456.905 kb on - strand, within ABIE53_000421 at 457.187 kb on - strand at 457.187 kb on - strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.222 kb on + strand at 457.223 kb on - strand at 457.223 kb on - strand at 457.223 kb on - strand at 457.322 kb on - strand, within ABIE53_000422 at 457.322 kb on - strand, within ABIE53_000422 at 457.591 kb on + strand, within ABIE53_000422 at 457.591 kb on + strand, within ABIE53_000422 at 457.591 kb on + strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.592 kb on - strand, within ABIE53_000422 at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.721 kb on + strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.722 kb on - strand at 457.746 kb on + strand at 457.850 kb on + strand at 457.850 kb on + strand at 457.851 kb on - strand at 457.851 kb on - strand at 457.851 kb on - strand at 457.855 kb on + strand at 457.872 kb on + strand at 457.872 kb on + strand at 457.872 kb on + strand at 457.872 kb on + strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.873 kb on - strand at 457.894 kb on + strand at 457.894 kb on + strand at 457.895 kb on - strand at 457.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 455,021 + ABIE53_000419 0.87 -2.4 455,731 + -0.6 455,731 + +1.6 455,731 + -2.4 455,731 + -0.6 455,731 + -0.6 455,731 + +0.5 455,731 + +0.4 455,731 + -0.1 455,732 - -0.2 455,732 - -3.1 455,732 - -0.2 455,732 - +2.3 455,732 - +1.4 455,732 - -1.6 455,732 - -1.4 455,825 + +0.5 455,825 + -1.9 455,825 + -1.2 455,825 + -0.2 455,826 - -0.2 455,839 + -1.8 455,840 - +1.3 455,890 + -0.6 455,890 + +2.4 455,890 + -2.3 455,891 - -0.6 455,891 - -0.2 455,891 - -0.3 455,891 - -0.6 455,891 - +0.2 455,891 - -2.5 455,975 - ABIE53_000421 0.11 +0.0 455,975 - ABIE53_000421 0.11 -3.1 456,087 + ABIE53_000421 0.19 -1.4 456,087 + ABIE53_000421 0.19 -2.1 456,088 - ABIE53_000421 0.19 -0.7 456,088 - ABIE53_000421 0.19 -1.5 456,097 + ABIE53_000421 0.20 -0.8 456,098 - ABIE53_000421 0.20 -0.9 456,098 - ABIE53_000421 0.20 -0.7 456,279 + ABIE53_000421 0.33 -1.9 456,280 + ABIE53_000421 0.33 -0.5 456,280 + ABIE53_000421 0.33 +0.4 456,280 + ABIE53_000421 0.33 -0.6 456,280 + ABIE53_000421 0.33 +1.4 456,280 + ABIE53_000421 0.33 +1.8 456,281 - ABIE53_000421 0.34 -1.0 456,281 - ABIE53_000421 0.34 +0.2 456,646 + ABIE53_000421 0.61 +0.4 456,904 + ABIE53_000421 0.80 -1.4 456,905 - ABIE53_000421 0.80 -0.6 456,905 - ABIE53_000421 0.80 -0.8 457,187 - -2.1 457,187 - -1.1 457,222 + +1.4 457,222 + -1.4 457,222 + +1.0 457,222 + -2.6 457,222 + +1.4 457,222 + -2.2 457,222 + +1.4 457,223 - -1.8 457,223 - -1.8 457,223 - +0.7 457,322 - ABIE53_000422 0.26 -1.2 457,322 - ABIE53_000422 0.26 +1.4 457,591 + ABIE53_000422 0.76 -0.6 457,591 + ABIE53_000422 0.76 -0.4 457,591 + ABIE53_000422 0.76 -2.4 457,592 - ABIE53_000422 0.76 -2.9 457,592 - ABIE53_000422 0.76 +1.4 457,592 - ABIE53_000422 0.76 -4.0 457,592 - ABIE53_000422 0.76 -0.2 457,592 - ABIE53_000422 0.76 +1.5 457,592 - ABIE53_000422 0.76 +0.4 457,721 + -1.6 457,721 + -1.2 457,721 + -1.0 457,721 + +1.1 457,721 + -1.4 457,721 + -0.6 457,721 + +1.2 457,722 - -0.5 457,722 - -2.2 457,722 - -0.2 457,722 - -1.2 457,722 - +1.3 457,722 - +0.3 457,722 - -0.9 457,722 - -0.8 457,722 - +0.5 457,722 - +0.2 457,746 + -0.7 457,850 + -1.2 457,850 + -0.7 457,851 - +0.8 457,851 - -3.0 457,851 - -1.6 457,855 + -0.2 457,872 + +0.9 457,872 + +3.4 457,872 + -1.4 457,872 + -1.2 457,873 - +0.4 457,873 - -0.6 457,873 - +1.4 457,873 - +2.7 457,873 - +6.5 457,873 - -1.8 457,894 + +3.3 457,894 + -1.2 457,895 - -0.6 457,895 - -0.1
Or see this region's nucleotide sequence