Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1862

Experiment: MoYLS4 with Zinc Sulfate 0.1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntprfB and DVU1862 overlap by 20 nucleotidesDVU1862 and DVU1863 overlap by 4 nucleotidesDVU1863 and ihfB are separated by 74 nucleotides DVU1861: prfB - peptide chain release factor 2, programmed frameshift (TIGR), at 1,928,351 to 1,929,467 prfB DVU1862: DVU1862 - GGDEF domain protein (TIGR), at 1,929,448 to 1,930,443 DVU1862 DVU1863: DVU1863 - flagellar synthesis regulator FleN, putative (TIGR), at 1,930,440 to 1,931,258 DVU1863 DVU1864: ihfB - DNA-binding protein HU, beta subunit, putative (TIGR), at 1,931,333 to 1,931,614 ihfB Position (kb) 1929 1930 1931Strain fitness (log2 ratio) -1 0 1at 1929.486 kb on - strandat 1929.486 kb on - strandat 1929.619 kb on + strand, within DVU1862at 1929.649 kb on - strand, within DVU1862at 1929.649 kb on - strand, within DVU1862at 1929.685 kb on + strand, within DVU1862at 1929.798 kb on + strand, within DVU1862at 1929.943 kb on + strand, within DVU1862at 1930.055 kb on + strand, within DVU1862at 1930.101 kb on + strand, within DVU1862at 1930.111 kb on + strand, within DVU1862at 1930.138 kb on + strand, within DVU1862at 1930.379 kb on - strandat 1930.387 kb on - strandat 1930.421 kb on + strandat 1930.421 kb on + strandat 1930.429 kb on - strandat 1930.467 kb on + strandat 1930.469 kb on - strandat 1930.499 kb on + strandat 1930.668 kb on - strand, within DVU1863at 1930.673 kb on - strand, within DVU1863at 1930.763 kb on - strand, within DVU1863at 1930.779 kb on + strand, within DVU1863at 1930.909 kb on + strand, within DVU1863at 1930.927 kb on - strand, within DVU1863at 1931.078 kb on + strand, within DVU1863at 1931.090 kb on + strand, within DVU1863at 1931.204 kb on - strandat 1931.252 kb on + strandat 1931.329 kb on - strandat 1931.350 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 0.1mM
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1,929,486 - +0.5
1,929,486 - -0.5
1,929,619 + DVU1862 0.17 +1.3
1,929,649 - DVU1862 0.20 +0.0
1,929,649 - DVU1862 0.20 +0.8
1,929,685 + DVU1862 0.24 +0.7
1,929,798 + DVU1862 0.35 +0.9
1,929,943 + DVU1862 0.50 +0.3
1,930,055 + DVU1862 0.61 +1.0
1,930,101 + DVU1862 0.66 +0.3
1,930,111 + DVU1862 0.67 +0.4
1,930,138 + DVU1862 0.69 -1.0
1,930,379 - -0.8
1,930,387 - +1.0
1,930,421 + +0.2
1,930,421 + -0.1
1,930,429 - -0.3
1,930,467 + -0.1
1,930,469 - -0.2
1,930,499 + +0.9
1,930,668 - DVU1863 0.28 +1.0
1,930,673 - DVU1863 0.28 +0.6
1,930,763 - DVU1863 0.39 -0.4
1,930,779 + DVU1863 0.41 +0.6
1,930,909 + DVU1863 0.57 +0.4
1,930,927 - DVU1863 0.59 +0.7
1,931,078 + DVU1863 0.78 -0.8
1,931,090 + DVU1863 0.79 +0.8
1,931,204 - +0.3
1,931,252 + +0.1
1,931,329 - -1.6
1,931,350 + -1.2

Or see this region's nucleotide sequence