Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.929.1 and Xcc-8004.930.1 are separated by 539 nucleotides Xcc-8004.930.1 and Xcc-8004.931.1 overlap by 4 nucleotides Xcc-8004.931.1 and Xcc-8004.932.1 are separated by 3 nucleotides
Xcc-8004.929.1: Xcc-8004.929.1 - Osmotically inducible protein OsmY, at 872,112 to 872,483
Xcc-8004.929.1
Xcc-8004.930.1: Xcc-8004.930.1 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 873,023 to 874,834
Xcc-8004.930.1
Xcc-8004.931.1: Xcc-8004.931.1 - Two-component system regulatory protein, at 874,831 to 875,271
Xcc-8004.931.1
Xcc-8004.932.1: Xcc-8004.932.1 - histidine kinase/response regulator hybrid protein, at 875,275 to 876,777
Xcc-8004.932.1
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.546 kb on + strand at 872.546 kb on + strand at 872.818 kb on + strand at 872.819 kb on - strand at 872.819 kb on - strand at 872.828 kb on + strand at 872.829 kb on - strand at 872.829 kb on - strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.899 kb on + strand at 872.900 kb on - strand at 872.914 kb on - strand at 872.914 kb on - strand at 872.914 kb on - strand at 872.978 kb on + strand at 872.978 kb on + strand at 872.978 kb on + strand at 872.978 kb on + strand at 872.978 kb on + strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.979 kb on - strand at 872.989 kb on + strand at 872.989 kb on + strand at 873.021 kb on + strand at 873.416 kb on - strand, within Xcc-8004.930.1 at 873.569 kb on + strand, within Xcc-8004.930.1 at 873.569 kb on + strand, within Xcc-8004.930.1 at 873.569 kb on + strand, within Xcc-8004.930.1 at 873.569 kb on + strand, within Xcc-8004.930.1 at 873.569 kb on + strand, within Xcc-8004.930.1 at 873.569 kb on + strand, within Xcc-8004.930.1 at 873.570 kb on - strand, within Xcc-8004.930.1 at 873.570 kb on - strand, within Xcc-8004.930.1 at 873.570 kb on - strand, within Xcc-8004.930.1 at 873.677 kb on + strand, within Xcc-8004.930.1 at 873.677 kb on + strand, within Xcc-8004.930.1 at 873.678 kb on - strand, within Xcc-8004.930.1 at 873.791 kb on + strand, within Xcc-8004.930.1 at 873.791 kb on + strand, within Xcc-8004.930.1 at 873.791 kb on + strand, within Xcc-8004.930.1 at 873.792 kb on - strand, within Xcc-8004.930.1 at 873.792 kb on - strand, within Xcc-8004.930.1 at 874.142 kb on + strand, within Xcc-8004.930.1 at 874.143 kb on - strand, within Xcc-8004.930.1 at 874.248 kb on - strand, within Xcc-8004.930.1 at 874.248 kb on - strand, within Xcc-8004.930.1 at 874.248 kb on - strand, within Xcc-8004.930.1 at 874.248 kb on - strand, within Xcc-8004.930.1 at 874.248 kb on - strand, within Xcc-8004.930.1 at 874.248 kb on - strand, within Xcc-8004.930.1 at 874.248 kb on - strand, within Xcc-8004.930.1 at 874.310 kb on + strand, within Xcc-8004.930.1 at 874.310 kb on + strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.520 kb on + strand, within Xcc-8004.930.1 at 874.520 kb on + strand, within Xcc-8004.930.1 at 874.521 kb on - strand, within Xcc-8004.930.1 at 874.521 kb on - strand, within Xcc-8004.930.1 at 874.586 kb on + strand, within Xcc-8004.930.1 at 874.587 kb on - strand, within Xcc-8004.930.1 at 874.587 kb on - strand, within Xcc-8004.930.1 at 874.830 kb on + strand at 874.830 kb on + strand at 874.830 kb on + strand at 874.831 kb on - strand at 874.845 kb on + strand at 874.846 kb on - strand at 874.963 kb on + strand, within Xcc-8004.931.1 at 874.963 kb on + strand, within Xcc-8004.931.1 at 874.963 kb on + strand, within Xcc-8004.931.1 at 874.964 kb on - strand, within Xcc-8004.931.1 at 874.964 kb on - strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.174 kb on - strand, within Xcc-8004.931.1 at 875.174 kb on - strand, within Xcc-8004.931.1 at 875.174 kb on - strand, within Xcc-8004.931.1 at 875.174 kb on - strand, within Xcc-8004.931.1 at 875.448 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.600 kb on - strand, within Xcc-8004.932.1 at 875.600 kb on - strand, within Xcc-8004.932.1 at 875.600 kb on - strand, within Xcc-8004.932.1 at 875.600 kb on - strand, within Xcc-8004.932.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 872,481 + -0.3 872,481 + -1.3 872,481 + +1.0 872,481 + +0.7 872,481 + +1.5 872,481 + -1.3 872,481 + -1.6 872,481 + -0.9 872,481 + -2.0 872,481 + -1.3 872,481 + -0.4 872,481 + -1.3 872,481 + +0.5 872,481 + +0.3 872,482 - -0.7 872,482 - -0.2 872,482 - -0.3 872,482 - -1.1 872,482 - -0.3 872,482 - -0.5 872,482 - -2.1 872,482 - +0.4 872,482 - +0.5 872,482 - -0.3 872,482 - -1.2 872,482 - +1.4 872,482 - -1.1 872,546 + -0.5 872,546 + -0.4 872,818 + +1.1 872,819 - -0.8 872,819 - -0.1 872,828 + -0.5 872,829 - +0.4 872,829 - +2.4 872,894 + +0.4 872,894 + -0.1 872,894 + +0.5 872,894 + +1.9 872,894 + -0.9 872,894 + +0.7 872,894 + +2.3 872,894 + +0.8 872,895 - +0.2 872,895 - +0.7 872,895 - -0.0 872,895 - -1.3 872,895 - +0.8 872,895 - +0.3 872,895 - +0.9 872,895 - -1.2 872,895 - +1.0 872,895 - -0.4 872,899 + -1.3 872,900 - -0.1 872,914 - -0.9 872,914 - +0.4 872,914 - -1.1 872,978 + +0.4 872,978 + -0.2 872,978 + -0.1 872,978 + -0.1 872,978 + -0.5 872,979 - -2.1 872,979 - -0.2 872,979 - -1.1 872,979 - -1.2 872,979 - -1.6 872,979 - -0.1 872,979 - -1.2 872,979 - -0.2 872,979 - -1.4 872,979 - +0.8 872,979 - -1.0 872,979 - -0.1 872,979 - -1.2 872,989 + -0.1 872,989 + +0.1 873,021 + -0.6 873,416 - Xcc-8004.930.1 0.22 -0.6 873,569 + Xcc-8004.930.1 0.30 -0.3 873,569 + Xcc-8004.930.1 0.30 -0.7 873,569 + Xcc-8004.930.1 0.30 -0.8 873,569 + Xcc-8004.930.1 0.30 +0.1 873,569 + Xcc-8004.930.1 0.30 -0.9 873,569 + Xcc-8004.930.1 0.30 -1.3 873,570 - Xcc-8004.930.1 0.30 -0.3 873,570 - Xcc-8004.930.1 0.30 -0.6 873,570 - Xcc-8004.930.1 0.30 +0.4 873,677 + Xcc-8004.930.1 0.36 -1.5 873,677 + Xcc-8004.930.1 0.36 -1.6 873,678 - Xcc-8004.930.1 0.36 -0.8 873,791 + Xcc-8004.930.1 0.42 -1.3 873,791 + Xcc-8004.930.1 0.42 +0.0 873,791 + Xcc-8004.930.1 0.42 -0.8 873,792 - Xcc-8004.930.1 0.42 -0.3 873,792 - Xcc-8004.930.1 0.42 -1.7 874,142 + Xcc-8004.930.1 0.62 -2.1 874,143 - Xcc-8004.930.1 0.62 -2.3 874,248 - Xcc-8004.930.1 0.68 -1.5 874,248 - Xcc-8004.930.1 0.68 -1.6 874,248 - Xcc-8004.930.1 0.68 +0.1 874,248 - Xcc-8004.930.1 0.68 -0.7 874,248 - Xcc-8004.930.1 0.68 -1.2 874,248 - Xcc-8004.930.1 0.68 -0.9 874,248 - Xcc-8004.930.1 0.68 -1.5 874,310 + Xcc-8004.930.1 0.71 +0.9 874,310 + Xcc-8004.930.1 0.71 -0.5 874,311 - Xcc-8004.930.1 0.71 -0.7 874,311 - Xcc-8004.930.1 0.71 -1.9 874,311 - Xcc-8004.930.1 0.71 -0.8 874,311 - Xcc-8004.930.1 0.71 -1.8 874,311 - Xcc-8004.930.1 0.71 -0.3 874,520 + Xcc-8004.930.1 0.83 -2.2 874,520 + Xcc-8004.930.1 0.83 -2.8 874,521 - Xcc-8004.930.1 0.83 -0.8 874,521 - Xcc-8004.930.1 0.83 -0.3 874,586 + Xcc-8004.930.1 0.86 -0.3 874,587 - Xcc-8004.930.1 0.86 -2.3 874,587 - Xcc-8004.930.1 0.86 -1.0 874,830 + -0.1 874,830 + -0.3 874,830 + -0.5 874,831 - -1.5 874,845 + +0.6 874,846 - +0.5 874,963 + Xcc-8004.931.1 0.30 -1.2 874,963 + Xcc-8004.931.1 0.30 +0.4 874,963 + Xcc-8004.931.1 0.30 +0.2 874,964 - Xcc-8004.931.1 0.30 -0.9 874,964 - Xcc-8004.931.1 0.30 -0.3 875,173 + Xcc-8004.931.1 0.78 -0.5 875,173 + Xcc-8004.931.1 0.78 +0.7 875,173 + Xcc-8004.931.1 0.78 +1.0 875,173 + Xcc-8004.931.1 0.78 -0.3 875,173 + Xcc-8004.931.1 0.78 +0.7 875,173 + Xcc-8004.931.1 0.78 -0.3 875,173 + Xcc-8004.931.1 0.78 -1.5 875,174 - Xcc-8004.931.1 0.78 -2.5 875,174 - Xcc-8004.931.1 0.78 -1.2 875,174 - Xcc-8004.931.1 0.78 +0.2 875,174 - Xcc-8004.931.1 0.78 +0.7 875,448 + Xcc-8004.932.1 0.12 +0.3 875,599 + Xcc-8004.932.1 0.22 -1.3 875,599 + Xcc-8004.932.1 0.22 -3.0 875,599 + Xcc-8004.932.1 0.22 -0.9 875,599 + Xcc-8004.932.1 0.22 -0.3 875,599 + Xcc-8004.932.1 0.22 -0.3 875,599 + Xcc-8004.932.1 0.22 +0.4 875,599 + Xcc-8004.932.1 0.22 -0.1 875,600 - Xcc-8004.932.1 0.22 -2.5 875,600 - Xcc-8004.932.1 0.22 -0.7 875,600 - Xcc-8004.932.1 0.22 -0.3 875,600 - Xcc-8004.932.1 0.22 -1.7
Or see this region's nucleotide sequence