Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.705.1

Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.704.1 and Xcc-8004.705.1 are separated by 805 nucleotidesXcc-8004.705.1 and Xcc-8004.706.1 are separated by 194 nucleotides Xcc-8004.704.1: Xcc-8004.704.1 - 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54), at 654,079 to 655,152 Xcc-8004.704.1 Xcc-8004.705.1: Xcc-8004.705.1 - hypothetical protein, at 655,958 to 656,251 Xcc-8004.705.1 Xcc-8004.706.1: Xcc-8004.706.1 - Propionyl-CoA:succinyl-CoA transferase, at 656,446 to 658,125 Xcc-8004.706.1 Position (kb) 655 656 657Strain fitness (log2 ratio) -1 0 1at 655.177 kb on - strandat 655.576 kb on + strandat 655.799 kb on + strandat 655.811 kb on - strandat 656.108 kb on + strand, within Xcc-8004.705.1at 656.139 kb on - strand, within Xcc-8004.705.1at 656.187 kb on - strand, within Xcc-8004.705.1at 656.198 kb on + strand, within Xcc-8004.705.1at 656.199 kb on - strand, within Xcc-8004.705.1at 656.210 kb on + strand, within Xcc-8004.705.1at 656.223 kb on - strandat 656.457 kb on + strandat 656.529 kb on - strandat 656.556 kb on - strandat 656.556 kb on - strandat 656.727 kb on + strand, within Xcc-8004.706.1at 657.112 kb on - strand, within Xcc-8004.706.1at 657.144 kb on + strand, within Xcc-8004.706.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
remove
655,177 - -0.0
655,576 + +0.1
655,799 + -0.4
655,811 - +0.3
656,108 + Xcc-8004.705.1 0.51 -1.2
656,139 - Xcc-8004.705.1 0.62 -0.1
656,187 - Xcc-8004.705.1 0.78 +1.4
656,198 + Xcc-8004.705.1 0.82 -1.4
656,199 - Xcc-8004.705.1 0.82 -1.2
656,210 + Xcc-8004.705.1 0.86 -0.2
656,223 - -0.9
656,457 + -0.5
656,529 - +0.5
656,556 - -0.8
656,556 - +0.0
656,727 + Xcc-8004.706.1 0.17 -0.7
657,112 - Xcc-8004.706.1 0.40 +0.1
657,144 + Xcc-8004.706.1 0.42 +0.5

Or see this region's nucleotide sequence