Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.663.1 and Xcc-8004.664.1 overlap by 4 nucleotides Xcc-8004.664.1 and Xcc-8004.665.1 overlap by 4 nucleotides Xcc-8004.665.1 and Xcc-8004.666.1 overlap by 1 nucleotides Xcc-8004.666.1 and Xcc-8004.667.1 overlap by 4 nucleotides
Xcc-8004.663.1: Xcc-8004.663.1 - Ser/Thr and Tyr protein phosphatase (dual specificity), at 605,988 to 607,322
Xcc-8004.663.1
Xcc-8004.664.1: Xcc-8004.664.1 - FIG01211909: hypothetical protein, at 607,319 to 607,762
Xcc-8004.664.1
Xcc-8004.665.1: Xcc-8004.665.1 - FIG01211711: hypothetical protein, at 607,759 to 609,267
Xcc-8004.665.1
Xcc-8004.666.1: Xcc-8004.666.1 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase-related protein, at 609,267 to 609,914
Xcc-8004.666.1
Xcc-8004.667.1: Xcc-8004.667.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 609,911 to 610,543
Xcc-8004.667.1
Position (kb) 607
608
609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.828 kb on + strand, within Xcc-8004.663.1 at 606.829 kb on - strand, within Xcc-8004.663.1 at 606.829 kb on - strand, within Xcc-8004.663.1 at 606.829 kb on - strand, within Xcc-8004.663.1 at 606.837 kb on + strand, within Xcc-8004.663.1 at 607.831 kb on + strand at 607.831 kb on + strand at 607.832 kb on - strand at 607.832 kb on - strand at 607.925 kb on + strand, within Xcc-8004.665.1 at 607.925 kb on + strand, within Xcc-8004.665.1 at 607.925 kb on + strand, within Xcc-8004.665.1 at 607.926 kb on - strand, within Xcc-8004.665.1 at 607.926 kb on - strand, within Xcc-8004.665.1 at 607.926 kb on - strand, within Xcc-8004.665.1 at 607.934 kb on - strand, within Xcc-8004.665.1 at 608.035 kb on + strand, within Xcc-8004.665.1 at 608.153 kb on - strand, within Xcc-8004.665.1 at 608.268 kb on - strand, within Xcc-8004.665.1 at 608.268 kb on - strand, within Xcc-8004.665.1 at 608.540 kb on - strand, within Xcc-8004.665.1 at 608.608 kb on + strand, within Xcc-8004.665.1 at 608.914 kb on + strand, within Xcc-8004.665.1 at 608.914 kb on + strand, within Xcc-8004.665.1 at 609.079 kb on + strand, within Xcc-8004.665.1 at 609.118 kb on + strand at 609.399 kb on + strand, within Xcc-8004.666.1 at 609.399 kb on + strand, within Xcc-8004.666.1 at 609.399 kb on + strand, within Xcc-8004.666.1 at 609.400 kb on - strand, within Xcc-8004.666.1 at 609.400 kb on - strand, within Xcc-8004.666.1 at 609.400 kb on - strand, within Xcc-8004.666.1 at 609.672 kb on + strand, within Xcc-8004.666.1 at 609.672 kb on + strand, within Xcc-8004.666.1 at 609.673 kb on - strand, within Xcc-8004.666.1 at 609.673 kb on - strand, within Xcc-8004.666.1 at 610.016 kb on + strand, within Xcc-8004.667.1 at 610.017 kb on - strand, within Xcc-8004.667.1 at 610.019 kb on + strand, within Xcc-8004.667.1 at 610.020 kb on - strand, within Xcc-8004.667.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 606,828 + Xcc-8004.663.1 0.63 -1.2 606,828 + Xcc-8004.663.1 0.63 -0.6 606,828 + Xcc-8004.663.1 0.63 -0.4 606,828 + Xcc-8004.663.1 0.63 -0.8 606,828 + Xcc-8004.663.1 0.63 -0.6 606,828 + Xcc-8004.663.1 0.63 +0.9 606,829 - Xcc-8004.663.1 0.63 +0.4 606,829 - Xcc-8004.663.1 0.63 +0.2 606,829 - Xcc-8004.663.1 0.63 -0.6 606,837 + Xcc-8004.663.1 0.64 +1.4 607,831 + +1.1 607,831 + -0.2 607,832 - -1.1 607,832 - +0.6 607,925 + Xcc-8004.665.1 0.11 -2.0 607,925 + Xcc-8004.665.1 0.11 +2.1 607,925 + Xcc-8004.665.1 0.11 +0.5 607,926 - Xcc-8004.665.1 0.11 -0.7 607,926 - Xcc-8004.665.1 0.11 -2.5 607,926 - Xcc-8004.665.1 0.11 +0.6 607,934 - Xcc-8004.665.1 0.12 -0.1 608,035 + Xcc-8004.665.1 0.18 -1.9 608,153 - Xcc-8004.665.1 0.26 -2.8 608,268 - Xcc-8004.665.1 0.34 -0.7 608,268 - Xcc-8004.665.1 0.34 -0.8 608,540 - Xcc-8004.665.1 0.52 -0.0 608,608 + Xcc-8004.665.1 0.56 -1.0 608,914 + Xcc-8004.665.1 0.77 -0.9 608,914 + Xcc-8004.665.1 0.77 -0.1 609,079 + Xcc-8004.665.1 0.87 +0.1 609,118 + -0.9 609,399 + Xcc-8004.666.1 0.20 +0.6 609,399 + Xcc-8004.666.1 0.20 -0.6 609,399 + Xcc-8004.666.1 0.20 -0.2 609,400 - Xcc-8004.666.1 0.21 -0.3 609,400 - Xcc-8004.666.1 0.21 +1.0 609,400 - Xcc-8004.666.1 0.21 +0.7 609,672 + Xcc-8004.666.1 0.62 +0.6 609,672 + Xcc-8004.666.1 0.62 +0.6 609,673 - Xcc-8004.666.1 0.63 -0.9 609,673 - Xcc-8004.666.1 0.63 +0.9 610,016 + Xcc-8004.667.1 0.17 +0.2 610,017 - Xcc-8004.667.1 0.17 -0.1 610,019 + Xcc-8004.667.1 0.17 +0.1 610,020 - Xcc-8004.667.1 0.17 +0.6
Or see this region's nucleotide sequence