Experiment: Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.573.1 and Xcc-8004.574.1 are separated by 409 nucleotides Xcc-8004.574.1 and Xcc-8004.576.1 are separated by 11 nucleotides
Xcc-8004.573.1: Xcc-8004.573.1 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 531,928 to 532,824
Xcc-8004.573.1
Xcc-8004.574.1: Xcc-8004.574.1 - Di-/tripeptide transporter, at 533,234 to 534,754
Xcc-8004.574.1
Xcc-8004.576.1: Xcc-8004.576.1 - FIG01210281: hypothetical protein, at 534,766 to 535,356
Xcc-8004.576.1
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.324 kb on + strand, within Xcc-8004.573.1 at 532.379 kb on - strand, within Xcc-8004.573.1 at 532.379 kb on - strand, within Xcc-8004.573.1 at 532.379 kb on - strand, within Xcc-8004.573.1 at 532.412 kb on + strand, within Xcc-8004.573.1 at 532.413 kb on - strand, within Xcc-8004.573.1 at 532.413 kb on - strand, within Xcc-8004.573.1 at 532.413 kb on - strand, within Xcc-8004.573.1 at 532.433 kb on - strand, within Xcc-8004.573.1 at 532.433 kb on - strand, within Xcc-8004.573.1 at 532.450 kb on + strand, within Xcc-8004.573.1 at 532.451 kb on - strand, within Xcc-8004.573.1 at 532.486 kb on + strand, within Xcc-8004.573.1 at 532.486 kb on + strand, within Xcc-8004.573.1 at 532.487 kb on - strand, within Xcc-8004.573.1 at 532.487 kb on - strand, within Xcc-8004.573.1 at 532.556 kb on - strand, within Xcc-8004.573.1 at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.772 kb on + strand at 532.772 kb on + strand at 532.772 kb on + strand at 532.895 kb on + strand at 532.895 kb on + strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.951 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.977 kb on - strand at 532.977 kb on - strand at 532.977 kb on - strand at 532.992 kb on + strand at 532.992 kb on + strand at 532.992 kb on + strand at 532.992 kb on + strand at 532.993 kb on - strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.151 kb on - strand at 533.151 kb on - strand at 533.151 kb on - strand at 533.151 kb on - strand at 533.161 kb on + strand at 533.161 kb on + strand at 533.161 kb on + strand at 533.162 kb on - strand at 533.162 kb on - strand at 533.162 kb on - strand at 533.217 kb on + strand at 533.218 kb on - strand at 533.218 kb on - strand at 533.218 kb on - strand at 533.375 kb on + strand at 533.375 kb on + strand at 533.376 kb on - strand at 533.376 kb on - strand at 533.376 kb on - strand at 533.402 kb on + strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.462 kb on + strand, within Xcc-8004.574.1 at 533.463 kb on - strand, within Xcc-8004.574.1 at 533.472 kb on - strand, within Xcc-8004.574.1 at 533.472 kb on - strand, within Xcc-8004.574.1 at 533.472 kb on - strand, within Xcc-8004.574.1 at 533.486 kb on + strand, within Xcc-8004.574.1 at 533.486 kb on + strand, within Xcc-8004.574.1 at 533.487 kb on - strand, within Xcc-8004.574.1 at 533.487 kb on - strand, within Xcc-8004.574.1 at 533.487 kb on - strand, within Xcc-8004.574.1 at 533.510 kb on + strand, within Xcc-8004.574.1 at 533.510 kb on + strand, within Xcc-8004.574.1 at 533.511 kb on - strand, within Xcc-8004.574.1 at 533.545 kb on + strand, within Xcc-8004.574.1 at 533.546 kb on - strand, within Xcc-8004.574.1 at 533.691 kb on - strand, within Xcc-8004.574.1 at 533.691 kb on - strand, within Xcc-8004.574.1 at 533.691 kb on - strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.736 kb on - strand, within Xcc-8004.574.1 at 533.736 kb on - strand, within Xcc-8004.574.1 at 533.825 kb on + strand, within Xcc-8004.574.1 at 533.826 kb on - strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.462 kb on - strand, within Xcc-8004.574.1 at 534.462 kb on - strand, within Xcc-8004.574.1 at 534.663 kb on - strand at 534.664 kb on + strand at 534.664 kb on + strand at 534.664 kb on + strand at 534.665 kb on - strand at 534.665 kb on - strand at 534.970 kb on + strand, within Xcc-8004.576.1 at 534.970 kb on + strand, within Xcc-8004.576.1 at 534.970 kb on + strand, within Xcc-8004.576.1 at 534.971 kb on - strand, within Xcc-8004.576.1 at 534.971 kb on - strand, within Xcc-8004.576.1 at 535.300 kb on + strand at 535.300 kb on + strand at 535.301 kb on - strand at 535.376 kb on + strand at 535.376 kb on + strand at 535.376 kb on + strand at 535.504 kb on - strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.678 kb on - strand at 535.678 kb on - strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.728 kb on - strand at 535.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x remove 532,264 + Xcc-8004.573.1 0.37 -0.7 532,264 + Xcc-8004.573.1 0.37 +0.5 532,264 + Xcc-8004.573.1 0.37 +0.9 532,264 + Xcc-8004.573.1 0.37 -0.4 532,264 + Xcc-8004.573.1 0.37 -0.8 532,264 + Xcc-8004.573.1 0.37 +0.3 532,264 + Xcc-8004.573.1 0.37 +1.8 532,264 + Xcc-8004.573.1 0.37 -0.0 532,264 + Xcc-8004.573.1 0.37 -1.5 532,264 + Xcc-8004.573.1 0.37 -0.7 532,264 + Xcc-8004.573.1 0.37 -0.8 532,264 + Xcc-8004.573.1 0.37 +0.7 532,265 - Xcc-8004.573.1 0.38 -3.1 532,265 - Xcc-8004.573.1 0.38 +0.1 532,265 - Xcc-8004.573.1 0.38 +0.4 532,265 - Xcc-8004.573.1 0.38 -1.0 532,265 - Xcc-8004.573.1 0.38 +0.6 532,265 - Xcc-8004.573.1 0.38 +0.4 532,324 + Xcc-8004.573.1 0.44 +0.1 532,379 - Xcc-8004.573.1 0.50 -2.5 532,379 - Xcc-8004.573.1 0.50 +0.1 532,379 - Xcc-8004.573.1 0.50 +0.5 532,412 + Xcc-8004.573.1 0.54 +0.4 532,413 - Xcc-8004.573.1 0.54 -0.2 532,413 - Xcc-8004.573.1 0.54 -2.2 532,413 - Xcc-8004.573.1 0.54 +0.9 532,433 - Xcc-8004.573.1 0.56 -0.1 532,433 - Xcc-8004.573.1 0.56 -0.4 532,450 + Xcc-8004.573.1 0.58 +1.6 532,451 - Xcc-8004.573.1 0.58 -0.1 532,486 + Xcc-8004.573.1 0.62 -1.2 532,486 + Xcc-8004.573.1 0.62 -1.2 532,487 - Xcc-8004.573.1 0.62 -1.4 532,487 - Xcc-8004.573.1 0.62 +0.6 532,556 - Xcc-8004.573.1 0.70 +0.0 532,764 + -1.2 532,764 + +0.5 532,764 + +1.4 532,764 + +1.4 532,764 + +0.1 532,764 + -1.6 532,764 + -0.4 532,764 + +0.1 532,764 + -0.2 532,764 + +0.2 532,764 + -1.4 532,764 + -0.1 532,764 + +0.1 532,764 + +0.2 532,765 - +0.8 532,765 - +0.2 532,765 - +1.5 532,765 - -1.8 532,765 - -0.6 532,765 - +0.3 532,765 - -0.6 532,765 - -0.8 532,765 - +1.2 532,765 - +1.1 532,765 - +0.2 532,765 - -0.8 532,772 + -1.3 532,772 + -1.9 532,772 + -0.2 532,895 + -3.3 532,895 + -1.9 532,896 - -0.7 532,896 - -0.0 532,896 - -0.9 532,896 - -0.8 532,896 - -0.1 532,896 - +0.2 532,951 + +0.1 532,976 + +0.9 532,976 + -0.4 532,976 + +0.4 532,976 + -0.1 532,976 + +0.5 532,977 - +1.4 532,977 - -0.7 532,977 - -0.2 532,992 + +0.1 532,992 + -1.2 532,992 + +1.5 532,992 + -0.9 532,993 - +0.5 533,150 + -0.1 533,150 + +0.1 533,150 + -0.2 533,150 + -0.5 533,150 + -0.3 533,150 + +0.5 533,150 + -0.1 533,150 + -0.6 533,150 + -0.4 533,151 - -2.8 533,151 - -1.4 533,151 - -1.5 533,151 - -0.7 533,161 + +1.4 533,161 + -1.4 533,161 + -1.8 533,162 - -0.1 533,162 - +0.6 533,162 - -0.4 533,217 + -0.7 533,218 - -0.8 533,218 - -0.9 533,218 - +0.6 533,375 + -1.4 533,375 + -0.9 533,376 - -0.9 533,376 - -1.2 533,376 - -0.2 533,402 + Xcc-8004.574.1 0.11 -1.7 533,403 - Xcc-8004.574.1 0.11 -1.7 533,403 - Xcc-8004.574.1 0.11 -0.9 533,403 - Xcc-8004.574.1 0.11 -1.2 533,403 - Xcc-8004.574.1 0.11 -0.4 533,403 - Xcc-8004.574.1 0.11 +0.1 533,403 - Xcc-8004.574.1 0.11 -1.9 533,462 + Xcc-8004.574.1 0.15 -0.4 533,463 - Xcc-8004.574.1 0.15 -1.9 533,472 - Xcc-8004.574.1 0.16 -0.9 533,472 - Xcc-8004.574.1 0.16 -1.4 533,472 - Xcc-8004.574.1 0.16 -0.6 533,486 + Xcc-8004.574.1 0.17 -0.6 533,486 + Xcc-8004.574.1 0.17 -2.4 533,487 - Xcc-8004.574.1 0.17 -1.1 533,487 - Xcc-8004.574.1 0.17 +0.2 533,487 - Xcc-8004.574.1 0.17 -2.5 533,510 + Xcc-8004.574.1 0.18 +0.6 533,510 + Xcc-8004.574.1 0.18 +0.6 533,511 - Xcc-8004.574.1 0.18 -0.9 533,545 + Xcc-8004.574.1 0.20 -0.9 533,546 - Xcc-8004.574.1 0.21 -0.4 533,691 - Xcc-8004.574.1 0.30 -1.7 533,691 - Xcc-8004.574.1 0.30 -0.4 533,691 - Xcc-8004.574.1 0.30 -0.4 533,735 + Xcc-8004.574.1 0.33 -1.9 533,735 + Xcc-8004.574.1 0.33 +1.4 533,735 + Xcc-8004.574.1 0.33 -1.4 533,735 + Xcc-8004.574.1 0.33 -1.4 533,735 + Xcc-8004.574.1 0.33 -1.4 533,736 - Xcc-8004.574.1 0.33 -3.1 533,736 - Xcc-8004.574.1 0.33 -1.7 533,825 + Xcc-8004.574.1 0.39 +1.1 533,826 - Xcc-8004.574.1 0.39 +0.9 533,993 + Xcc-8004.574.1 0.50 +0.2 533,993 + Xcc-8004.574.1 0.50 +0.1 533,993 + Xcc-8004.574.1 0.50 -1.6 533,993 + Xcc-8004.574.1 0.50 -2.4 533,994 - Xcc-8004.574.1 0.50 -0.4 533,994 - Xcc-8004.574.1 0.50 -0.4 533,994 - Xcc-8004.574.1 0.50 +0.4 533,994 - Xcc-8004.574.1 0.50 +0.6 534,461 + Xcc-8004.574.1 0.81 -1.7 534,461 + Xcc-8004.574.1 0.81 -1.4 534,461 + Xcc-8004.574.1 0.81 -0.1 534,461 + Xcc-8004.574.1 0.81 -0.7 534,462 - Xcc-8004.574.1 0.81 +0.6 534,462 - Xcc-8004.574.1 0.81 -0.4 534,663 - -0.9 534,664 + -1.7 534,664 + -1.4 534,664 + -1.7 534,665 - -0.9 534,665 - -0.3 534,970 + Xcc-8004.576.1 0.35 -0.4 534,970 + Xcc-8004.576.1 0.35 -0.7 534,970 + Xcc-8004.576.1 0.35 +1.3 534,971 - Xcc-8004.576.1 0.35 -1.4 534,971 - Xcc-8004.576.1 0.35 +0.0 535,300 + +2.6 535,300 + +0.6 535,301 - +0.2 535,376 + +0.8 535,376 + -0.1 535,376 + -0.4 535,504 - +0.1 535,524 + -0.9 535,524 + +0.1 535,524 + -1.9 535,524 + +0.2 535,524 + +0.3 535,524 + +0.4 535,524 + -0.6 535,525 - +0.6 535,525 - +1.1 535,525 - +2.6 535,525 - -0.2 535,525 - -0.4 535,525 - +0.7 535,525 - -1.3 535,525 - +0.3 535,525 - +1.1 535,677 + +0.6 535,677 + -0.6 535,677 + -0.3 535,677 + -0.5 535,677 + -1.0 535,677 + +1.0 535,678 - +0.2 535,678 - -0.2 535,727 + -0.9 535,727 + +2.0 535,727 + +0.1 535,727 + -0.1 535,727 + +0.2 535,727 + +0.6 535,728 - +0.9 535,728 - -0.0
Or see this region's nucleotide sequence